Gm12399 Pseudogene Detail

Summary

• Symbol
  Gm12399
• Name
  predicted gene 12399

• Feature Type
  pseudogene
• IDs
  MGI:3651917
  NCBI Gene: 100418434
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98577189-98579609 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 42.84 cM

Strain
Comparison

• SNPs within 2kb
  239 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651917	pseudogene	Chr3:98577170-98585647 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0040303	pseudogene	Chr3:96548379-96559050 (-)
AKR/J	MGP_AKRJ_G0040240	pseudogene	Chr3:98831380-98844529 (-)
BALB/cJ	MGP_BALBcJ_G0040302	pseudogene	Chr3:96350175-96357679 (-)
C3H/HeJ	MGP_C3HHeJ_G0039933	pseudogene	Chr3:99173579-99182384 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039897	pseudogene	Chr3:107084821-107095477 (-)
DBA/2J	MGP_DBA2J_G0040104	pseudogene	Chr3:95806741-95816089 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0040999	pseudogene	Chr3:98427596-98438056 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0039247	pseudogene	Chr3:98947538-98973398 (-)

Homology

• Gene Tree
  Gm12399
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm12399
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000081919 (Evidence)
• NCBI Gene
  100418434

Representative Sequences			Length	Strain/Species
genomic	100418434	NCBI Gene Model | MGI Sequence Detail	2421	C57BL/6J

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426