Cyp4a29-ps1 Pseudogene Detail

Summary

• Symbol
  Cyp4a29-ps1
• Name
  cytochrome P450, family 4, subfamily a, polypeptide 29, pseudogene 1
• Synonyms
  Gm12831

• Feature Type
  pseudogene
• IDs
  MGI:3651920
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:115032995-115034040 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.81 cM

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651920	pseudogene	Chr4:115032995-115034040 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040369	pseudogene	Chr4:115943587-115944632 (+)
A/J	MGP_AJ_G0040346	pseudogene	Chr4:111531187-111532232 (+)
AKR/J	MGP_AKRJ_G0040274	pseudogene	Chr4:113839833-113840878 (+)
BALB/cJ	MGP_BALBcJ_G0040348	pseudogene	Chr4:112169027-112170072 (+)
C3H/HeJ	MGP_C3HHeJ_G0039973	pseudogene	Chr4:115451332-115453151 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040951	pseudogene	Chr4:120432598-120433643 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039045	pseudogene	Chr4:112872938-112873983 (+)
CBA/J	MGP_CBAJ_G0039938	pseudogene	Chr4:123552340-123553621 (+)
DBA/2J	MGP_DBA2J_G0040144	pseudogene	Chr4:112174569-112175614 (+)
FVB/NJ	MGP_FVBNJ_G0040099	pseudogene	Chr4:110640614-110641659 (+)
LP/J	MGP_LPJ_G0040190	pseudogene	Chr4:116142240-116143285 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040093	pseudogene	Chr4:128706125-128707170 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041042	pseudogene	Chr4:115089715-115090760 (+)
PWK/PhJ	MGP_PWKPhJ_G0038737	pseudogene	Chr4:108985528-108986696 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038439	pseudogene	Chr4:111489582-111492417 (+)
WSB/EiJ	MGP_WSBEiJ_G0039289	pseudogene	Chr4:114867571-114868616 (+)

Homology

• Gene Tree
  Cyp4a29-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Cyp4a29-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082889 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082889	Ensembl Gene Model | MGI Sequence Detail	1046	C57BL/6J
transcript	ENSMUST00000120882	Ensembl | MGI Sequence Detail	171	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;