Gm12386 Pseudogene Detail

Summary

• Symbol
  Gm12386
• Name
  predicted gene 12386

• Feature Type
  pseudogene
• IDs
  MGI:3651977
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:39844187-39844874 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 20.24 cM

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651977	pseudogene	Chr4:39844187-39844874 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012618	pseudogene	Chr4:37682653-37683340 (-)
A/J	MGP_AJ_G0012609	pseudogene	Chr4:36293229-36293916 (-)
AKR/J	MGP_AKRJ_G0012577	pseudogene	Chr4:37187428-37188115 (-)
BALB/cJ	MGP_BALBcJ_G0012593	pseudogene	Chr4:36606826-36607513 (-)
C3H/HeJ	MGP_C3HHeJ_G0012455	pseudogene	Chr4:37753733-37754420 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012911	pseudogene	Chr4:39119306-39119993 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011232	pseudogene	Chr4:34005183-34005875 (-)
CAST/EiJ	MGP_CASTEiJ_G0012210	pseudogene	Chr4:37427435-37428122 (-)
CBA/J	MGP_CBAJ_G0012433	pseudogene	Chr4:40427803-40428490 (-)
DBA/2J	MGP_DBA2J_G0012491	pseudogene	Chr4:36187370-36188057 (-)
FVB/NJ	MGP_FVBNJ_G0012492	pseudogene	Chr4:35566395-35567082 (-)
LP/J	MGP_LPJ_G0012560	pseudogene	Chr4:37770495-37771182 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012495	pseudogene	Chr4:43819247-43819934 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012911	pseudogene	Chr4:37298567-37299254 (-)
PWK/PhJ	MGP_PWKPhJ_G0012040	pseudogene	Chr4:36221543-36222230 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011856	pseudogene	Chr4:37032314-37033001 (-)
WSB/EiJ	MGP_WSBEiJ_G0012234	pseudogene	Chr4:37320638-37321325 (-)

Homology

• Gene Tree
  Gm12386
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12386
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082022 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082022	Ensembl Gene Model | MGI Sequence Detail	688	C57BL/6J
transcript	ENSMUST00000117380	Ensembl | MGI Sequence Detail	688	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;