Gm11410 Pseudogene Detail

Summary

• Symbol
  Gm11410
• Name
  predicted gene 11410

• Feature Type
  pseudogene
• IDs
  MGI:3652015
  NCBI Gene: 100503011
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr4:79922226-79923368 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 37.89 cM

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652015	pseudogene	Chr4:79922226-79923368 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012731	pseudogene	Chr4:79519709-79520851 (+)
A/J	MGP_AJ_G0012717	pseudogene	Chr4:76773700-76775568 (+)
AKR/J	MGP_AKRJ_G0012689	pseudogene	Chr4:78714122-78715264 (+)
BALB/cJ	MGP_BALBcJ_G0012699	pseudogene	Chr4:76987274-76988416 (+)
C3H/HeJ	MGP_C3HHeJ_G0012559	pseudogene	Chr4:79332695-79333837 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013029	pseudogene	Chr4:82626600-82627742 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012314	pseudogene	Chr4:77313801-77314943 (+)
CBA/J	MGP_CBAJ_G0012536	pseudogene	Chr4:85222783-85223925 (+)
DBA/2J	MGP_DBA2J_G0012596	pseudogene	Chr4:76520040-76521182 (+)
FVB/NJ	MGP_FVBNJ_G0012599	pseudogene	Chr4:75547748-75548890 (+)
LP/J	MGP_LPJ_G0012669	pseudogene	Chr4:79863417-79864559 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012608	pseudogene	Chr4:90147201-90148343 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013034	pseudogene	Chr4:78836313-78837455 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012338	pseudogene	Chr4:78951974-78953116 (+)

Homology

• Gene Tree
  Gm11410
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm11410
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000083219 (Evidence)
• NCBI Gene
  100503011

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083219	Ensembl Gene Model | MGI Sequence Detail	1143	C57BL/6J
transcript	ENSMUST00000120053	Ensembl | MGI Sequence Detail	1143	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11410:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37659	Chr4:79921401-79921409 (+)	-821 bp
Tssr37660	Chr4:79921663-79921697 (+)	-546 bp
Tssr37661	Chr4:79921706-79921736 (+)	-505 bp
Tssr37662	Chr4:79922227-79922229 (+)	2 bp
Tssr37663	Chr4:79922690-79922719 (+)	479 bp
Tssr37664	Chr4:79922748-79922756 (+)	526 bp