Gm12928 Pseudogene Detail

Summary

• Symbol
  Gm12928
• Name
  predicted gene 12928

• Feature Type
  pseudogene
• IDs
  MGI:3652022
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:126370520-126371092 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 60.90 cM

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652022	pseudogene	Chr4:126370520-126371092 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013236	pseudogene	Chr5:113158791-113160482 (-)
A/J	MGP_AJ_G0013217	pseudogene	Chr5:108772691-108774382 (-)
AKR/J	MGP_AKRJ_G0013183	pseudogene	Chr5:112221946-112223637 (-)
BALB/cJ	MGP_BALBcJ_G0013198	pseudogene	Chr5:110142296-110143987 (-)
C3H/HeJ	MGP_C3HHeJ_G0013046	pseudogene	Chr5:112656753-112658444 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013564	pseudogene	Chr5:117605575-117607266 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011724	pseudogene	Chr5:103608102-103609810 (-)
CAST/EiJ	MGP_CASTEiJ_G0012773	pseudogene	Chr5:111534845-111536536 (-)
CBA/J	MGP_CBAJ_G0013015	pseudogene	Chr5:122032022-122033713 (-)
DBA/2J	MGP_DBA2J_G0013097	pseudogene	Chr5:108848432-108850123 (-)
FVB/NJ	MGP_FVBNJ_G0013095	pseudogene	Chr5:107516183-107517937 (-)
LP/J	MGP_LPJ_G0013169	pseudogene	Chr5:113713554-113715245 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013116	pseudogene	Chr5:126681529-126683260 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013566	pseudogene	Chr5:111665012-111666703 (-)
PWK/PhJ	MGP_PWKPhJ_G0012586	pseudogene	Chr5:107428147-107429831 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012380	pseudogene	Chr5:109136929-109138620 (-)
WSB/EiJ	MGP_WSBEiJ_G0012809	pseudogene	Chr5:112140699-112142390 (-)

Homology

• Gene Tree
  Gm12928
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12928
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082381 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082381	Ensembl Gene Model | MGI Sequence Detail	573	C57BL/6J
transcript	ENSMUST00000117115	Ensembl | MGI Sequence Detail	573	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;