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Trav21-dv12 Gene Detail
Summary
  • Symbol
    Trav21-dv12
  • Name
    T cell receptor alpha variable 21-DV12
  • Synonyms
    Gm13892
  • Feature Type
    gene segment
  • IDs
    MGI:3652097
    NCBI Gene: 100101940
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:54113473-54114209 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.55 cM
Strain
Comparison
more
  • SNPs within 2kb
    96 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3652097
 gene segment Chr14:54113441-54114209 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002569
 gene segment Chr14:47806573-47807343 (+)
A/J MGP_AJ_G0002540
 gene segment Chr14:46905554-46906324 (+)
AKR/J MGP_AKRJ_G0002531
 gene segment Chr14:48603196-48603966 (+)
BALB/cJ MGP_BALBcJ_G0002526
 gene segment Chr14:46873701-46874471 (+)
C3H/HeJ MGP_C3HHeJ_G0002493
 gene segment Chr14:48277534-48278304 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002667
 gene segment Chr14:50240028-50240796 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002237
 gene segment Chr14:45334444-45335215 (+)
CAST/EiJ MGP_CASTEiJ_G0002479
 gene segment Chr14:44524485-44525254 (+)
CBA/J MGP_CBAJ_G0002492
 gene segment Chr14:51736185-51736955 (+)
DBA/2J MGP_DBA2J_G0002496
 gene segment Chr14:46627518-46628288 (+)
FVB/NJ MGP_FVBNJ_G0002524
 gene segment Chr14:46109916-46110686 (+)
LP/J MGP_LPJ_G0002575
 gene segment Chr14:48823921-48824691 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002499
 gene segment Chr14:51188961-51189731 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002677
 gene segment Chr14:47786117-47786887 (+)
PWK/PhJ MGP_PWKPhJ_G0002438
 gene segment Chr14:43176221-43176991 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002390
 gene segment Chr14:43763334-43764077 (+)
WSB/EiJ MGP_WSBEiJ_G0002494
 gene segment Chr14:48083858-48084628 (+)



Homology
more
  • Human Ortholog
    TRAV26-2, T cell receptor alpha variable 26-2
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV26-2, T cell receptor alpha variable 26-2
  • Synonyms
    TCRAV26S2, TCRAV4S1, TRAV262
  • Links
    NCBI Gene ID: 28656
    UniProt: A0A0B4J265

  • Chr Location
    14q11.2; chr14:22202583-22203368 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100101940 NCBI Gene Model | MGI Sequence Detail 737 C57BL/6J ±  kb
polypeptide A0A075B6C4 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 9
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory