Gm13475 Pseudogene Detail

Summary

• Symbol
  Gm13475
• Name
  predicted gene 13475

• Feature Type
  pseudogene
• IDs
  MGI:3652111
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:45219244-45219477 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 27.37 cM

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652111	pseudogene	Chr2:45219244-45219477 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011616	pseudogene	Chr2:44415963-44416196 (+)
A/J	MGP_AJ_G0011614	pseudogene	Chr2:42612502-42612735 (+)
AKR/J	MGP_AKRJ_G0011579	pseudogene	Chr2:43923673-43923906 (+)
BALB/cJ	MGP_BALBcJ_G0011594	pseudogene	Chr2:42671385-42671618 (+)
C3H/HeJ	MGP_C3HHeJ_G0011480	pseudogene	Chr2:43854145-43854378 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011887	pseudogene	Chr2:45750781-45751014 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010416	pseudogene	Chr2:40919159-40919392 (+)
CAST/EiJ	MGP_CASTEiJ_G0011276	pseudogene	Chr2:43907456-43907689 (+)
CBA/J	MGP_CBAJ_G0011451	pseudogene	Chr2:47466191-47466424 (+)
DBA/2J	MGP_DBA2J_G0011508	pseudogene	Chr2:42277295-42277528 (+)
FVB/NJ	MGP_FVBNJ_G0011509	pseudogene	Chr2:42082817-42083050 (+)
LP/J	MGP_LPJ_G0011573	pseudogene	Chr2:44222553-44222786 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011508	pseudogene	Chr2:47884626-47884859 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011878	pseudogene	Chr2:43849066-43849299 (+)
PWK/PhJ	MGP_PWKPhJ_G0011134	pseudogene	Chr2:42210615-42210848 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010954	pseudogene	Chr2:43926946-43927179 (+)
WSB/EiJ	MGP_WSBEiJ_G0011300	pseudogene	Chr2:44042931-44043164 (+)

Homology

• Gene Tree
  Gm13475
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081830 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081830	Ensembl Gene Model | MGI Sequence Detail	234	C57BL/6J
transcript	ENSMUST00000119290	Ensembl | MGI Sequence Detail	234	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;