Gm13416 Pseudogene Detail

Summary

• Symbol
  Gm13416
• Name
  predicted gene 13416

• Feature Type
  pseudogene
• IDs
  MGI:3652158
  NCBI Gene: 664938
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:24482914-24484525 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 16.57 cM

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652158	pseudogene	Chr2:24482583-24484525 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011565	pseudogene	Chr2:22410996-22412607 (-)
A/J	MGP_AJ_G0011562	pseudogene	Chr2:21541173-21542784 (-)
AKR/J	MGP_AKRJ_G0011527	pseudogene	Chr2:22278980-22280591 (-)
BALB/cJ	MGP_BALBcJ_G0011542	pseudogene	Chr2:21656168-21658011 (-)
C3H/HeJ	MGP_C3HHeJ_G0011427	pseudogene	Chr2:22215313-22216924 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011833	pseudogene	Chr2:23135692-23137303 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010368	pseudogene	Chr2:20467065-20468696 (-)
CAST/EiJ	MGP_CASTEiJ_G0011227	pseudogene	Chr2:22074229-22075842 (-)
CBA/J	MGP_CBAJ_G0011400	pseudogene	Chr2:23932033-23933644 (-)
DBA/2J	MGP_DBA2J_G0011458	pseudogene	Chr2:21401619-21403230 (-)
FVB/NJ	MGP_FVBNJ_G0011458	pseudogene	Chr2:21141571-21143182 (-)
LP/J	MGP_LPJ_G0011522	pseudogene	Chr2:22352491-22354102 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011457	pseudogene	Chr2:24171064-24172675 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011822	pseudogene	Chr2:22213090-22214701 (-)
PWK/PhJ	MGP_PWKPhJ_G0011086	pseudogene	Chr2:21193241-21194853 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010906	pseudogene	Chr2:22340954-22342565 (-)
WSB/EiJ	MGP_WSBEiJ_G0011251	pseudogene	Chr2:22293442-22295053 (-)

Homology

• Gene Tree
  Gm13416
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084241 (Evidence)
• NCBI Gene
  664938

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084241	Ensembl Gene Model | MGI Sequence Detail	1612	C57BL/6J
transcript	ENSMUST00000117264	Ensembl | MGI Sequence Detail	1612	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13416:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22914	Chr2:24483090-24483108 (-)	1,426 bp