Gm12348 Gene Detail

Summary

• Symbol
  Gm12348
• Name
  predicted gene 12348

• Feature Type
  lncRNA gene
• IDs
  MGI:3652160
  NCBI Gene: 102635937
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:100292334-100293078 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.47 cM

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652160	lncRNA gene	Chr11:100288942-100294691 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015209	unclassified non-coding RNA gene	Chr11:103159828-103160572 (+)
A/J	MGP_AJ_G0015183	unclassified non-coding RNA gene	Chr11:98849285-98850030 (+)
AKR/J	MGP_AKRJ_G0015146	unclassified non-coding RNA gene	Chr11:101894630-101895368 (+)
BALB/cJ	MGP_BALBcJ_G0015145	unclassified non-coding RNA gene	Chr11:99329722-99330466 (+)
C3H/HeJ	MGP_C3HHeJ_G0014969	unclassified non-coding RNA gene	Chr11:102093695-102094439 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015602	unclassified non-coding RNA gene	Chr11:106364968-106365712 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013345	unclassified non-coding RNA gene	Chr11:96266136-96266870 (+)
CAST/EiJ	MGP_CASTEiJ_G0014522	unclassified non-coding RNA gene	Chr11:103063927-103064667 (+)
CBA/J	MGP_CBAJ_G0014948	unclassified non-coding RNA gene	Chr11:110788530-110789274 (+)
DBA/2J	MGP_DBA2J_G0015041	unclassified non-coding RNA gene	Chr11:98387951-98388695 (+)
FVB/NJ	MGP_FVBNJ_G0015052	unclassified non-coding RNA gene	Chr11:97918831-97919575 (+)
LP/J	MGP_LPJ_G0015122	unclassified non-coding RNA gene	Chr11:103703847-103704591 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015079	unclassified non-coding RNA gene	Chr11:110404191-110404935 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015641	unclassified non-coding RNA gene	Chr11:102240500-102241244 (+)
PWK/PhJ	MGP_PWKPhJ_G0014314	unclassified non-coding RNA gene	Chr11:99424974-99425715 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014101	unclassified non-coding RNA gene	Chr11:101956636-101957377 (+)
WSB/EiJ	MGP_WSBEiJ_G0014625	unclassified non-coding RNA gene	Chr11:102225253-102225997 (+)

Homology

• Gene Tree
  Gm12348
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Gm12348
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086031 (Evidence)
• NCBI Gene
  102635937

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086031	Ensembl Gene Model | MGI Sequence Detail	745	C57BL/6J
transcript	ENSMUST00000138915	Ensembl | MGI Sequence Detail	313	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:50799 Liu P, et al., Embryonic lethality and tumorigenesis caused by segmental aneuploidy on mouse chromosome 11. Genetics. 1998 Nov;150(3):1155-68
• Latest
  J:232020 Ermakova O, et al., Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice. EMBO Mol Med. 2011 Jan;3(1):50-66