Gm13222 Pseudogene Detail

Summary

• Symbol
  Gm13222
• Name
  predicted gene 13222

• Feature Type
  pseudogene
• IDs
  MGI:3652164
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:145305606-145305743 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.21 cM

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652164	pseudogene	Chr4:145305606-145305743 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012455	pseudogene	Chr3:145567431-145567568 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0012895	pseudogene	Chr4:143190745-143190882 (+)
C3H/HeJ	MGP_C3HHeJ_G0012296	pseudogene	Chr3:144477286-144477423 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013246	pseudogene	Chr4:154076966-154077103 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012490	pseudogene	Chr4:145172942-145173079 (+)
CBA/J	MGP_CBAJ_G0012274	pseudogene	Chr3:155823733-155823870 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012798	pseudogene	Chr4:141996806-141996943 (+)
LP/J	MGP_LPJ_G0012863	pseudogene	Chr4:148849647-148849785 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012337	pseudogene	Chr3:164133046-164133183 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012088	pseudogene	Chr3:144603878-144604015 (-)

Homology

• Gene Tree
  Gm13222
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13222
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13

• Ensembl
  ENSMUSG00000080732 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080732	Ensembl Gene Model | MGI Sequence Detail	138	C57BL/6J
transcript	ENSMUST00000119638	Ensembl | MGI Sequence Detail	138	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;