Gm13728 Pseudogene Detail

Summary

• Symbol
  Gm13728
• Name
  predicted gene 13728

• Feature Type
  pseudogene
• IDs
  MGI:3652180
  NCBI Gene: 100041923
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87109259-87109658 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.86 cM

Strain
Comparison

• SNPs within 2kb
  255 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652180	pseudogene	Chr2:87109259-87109982 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011745	pseudogene	Chr2:88294389-88294788 (+)
A/J	MGP_AJ_G0011740	pseudogene	Chr2:84744384-84744790 (+)
AKR/J	MGP_AKRJ_G0011708	pseudogene	Chr2:87122891-87123297 (+)
BALB/cJ	MGP_BALBcJ_G0011720	pseudogene	Chr2:85009152-85009558 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012016	pseudogene	Chr2:91236839-91237238 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010525	pseudogene	Chr2:81561372-81561771 (+)
CAST/EiJ	MGP_CASTEiJ_G0011393	pseudogene	Chr2:87806728-87807127 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0011632	pseudogene	Chr2:84413719-84414125 (+)
FVB/NJ	MGP_FVBNJ_G0011638	pseudogene	Chr2:83483303-83483709 (+)
LP/J	MGP_LPJ_G0011701	pseudogene	Chr2:88307256-88307655 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011639	pseudogene	Chr2:97048275-97048681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012013	pseudogene	Chr2:87220573-87220970 (+)
PWK/PhJ	MGP_PWKPhJ_G0011243	pseudogene	Chr2:84254591-84254990 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011070	pseudogene	Chr2:87242586-87242983 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13728
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13728
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000082225 (Evidence)
• NCBI Gene
  100041923

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082225	Ensembl Gene Model | MGI Sequence Detail	400	C57BL/6J
transcript	ENSMUST00000117471	Ensembl | MGI Sequence Detail	400	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087