Gm12686 Pseudogene Detail

Summary

• Symbol
  Gm12686
• Name
  predicted gene 12686

• Feature Type
  pseudogene
• IDs
  MGI:3652197
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:99307010-99307406 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.68 cM

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652197	pseudogene	Chr4:99307010-99307406 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012782	pseudogene	Chr4:99656466-99656862 (+)
A/J	MGP_AJ_G0012768	pseudogene	Chr4:96193028-96193424 (+)
AKR/J	MGP_AKRJ_G0012738	pseudogene	Chr4:98521926-98522322 (+)
BALB/cJ	MGP_BALBcJ_G0012749	pseudogene	Chr4:96445941-96446337 (+)
C3H/HeJ	MGP_C3HHeJ_G0012606	pseudogene	Chr4:99334184-99334580 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013080	pseudogene	Chr4:103421270-103421666 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011362	pseudogene	Chr4:91569129-91569525 (+)
CAST/EiJ	MGP_CASTEiJ_G0012360	pseudogene	Chr4:97120050-97120446 (+)
CBA/J	MGP_CBAJ_G0012582	pseudogene	Chr4:106625206-106625602 (+)
DBA/2J	MGP_DBA2J_G0012644	pseudogene	Chr4:95913891-95914287 (+)
FVB/NJ	MGP_FVBNJ_G0012648	pseudogene	Chr4:94756618-94757014 (+)
LP/J	MGP_LPJ_G0012719	pseudogene	Chr4:99974723-99975119 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012657	pseudogene	Chr4:112330429-112330825 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013088	pseudogene	Chr4:98763161-98763557 (+)
PWK/PhJ	MGP_PWKPhJ_G0012183	pseudogene	Chr4:94066349-94066745 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011992	pseudogene	Chr4:96216195-96216591 (+)
WSB/EiJ	MGP_WSBEiJ_G0012387	pseudogene	Chr4:98909959-98910355 (+)

Homology

• Gene Tree
  Gm12686
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12686
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082442 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082442	Ensembl Gene Model | MGI Sequence Detail	397	C57BL/6J
transcript	ENSMUST00000120546	Ensembl | MGI Sequence Detail	397	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;