Gm13856 Gene Detail

Summary

• Symbol
  Gm13856
• Name
  predicted gene 13856

• Feature Type
  lncRNA gene
• IDs
  MGI:3652199
  NCBI Gene: 100534641
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:34128864-34151170 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 14.75 cM

Strain
Comparison

• SNPs within 2kb
  752 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652199	lncRNA gene	Chr6:34128864-34151170 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004249	antisense lncRNA gene	Chr6:32214750-32237019 (+)
A/J	MGP_AJ_G0004227	antisense lncRNA gene	Chr6:30845216-30867524 (+)
AKR/J	MGP_AKRJ_G0004208	antisense lncRNA gene	Chr6:31871084-31893390 (+)
BALB/cJ	MGP_BALBcJ_G0004214	antisense lncRNA gene	Chr6:31026055-31048361 (+)
C3H/HeJ	MGP_C3HHeJ_G0004162	antisense lncRNA gene	Chr6:31843506-31865810 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004363	antisense lncRNA gene	Chr6:33030594-33052900 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003836	antisense lncRNA gene	Chr6:28934415-28957054 (+)
CAST/EiJ	MGP_CASTEiJ_G0004124	antisense lncRNA gene	Chr6:31644871-31667210 (+)
CBA/J	MGP_CBAJ_G0004156	antisense lncRNA gene	Chr6:34304472-34326796 (+)
DBA/2J	MGP_DBA2J_G0004172	antisense lncRNA gene	Chr6:30720581-30742887 (+)
FVB/NJ	MGP_FVBNJ_G0004188	antisense lncRNA gene	Chr6:30503194-30525463 (+)
LP/J	MGP_LPJ_G0004250	antisense lncRNA gene	Chr6:32342589-32364858 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004178	antisense lncRNA gene	Chr6:36662596-36684902 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004360	antisense lncRNA gene	Chr6:31764375-31786681 (+)
PWK/PhJ	MGP_PWKPhJ_G0004077	antisense lncRNA gene	Chr6:30323297-30345717 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004021	antisense lncRNA gene	Chr6:31399264-31421749 (+)
WSB/EiJ	MGP_WSBEiJ_G0004160	antisense lncRNA gene	Chr6:31677037-31699294 (+)

Homology

• Gene Tree
  Gm13856
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000087356 (Evidence)
• NCBI Gene
  100534641

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087356	Ensembl Gene Model | MGI Sequence Detail	22307	C57BL/6J
transcript	ENSMUST00000126498	Ensembl | MGI Sequence Detail	1742	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;