Gm11771 Pseudogene Detail

Summary

• Symbol
  Gm11771
• Name
  predicted gene 11771

• Feature Type
  pseudogene
• IDs
  MGI:3652201
  NCBI Gene: 667778
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:120656136-120658191 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 84.52 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652201	pseudogene	Chr11:120656090-120658212 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040000	pseudogene	Chr11:125253252-125255327 (+)
A/J	MGP_AJ_G0040009	pseudogene	Chr11:119677636-119679691 (+)
AKR/J	MGP_AKRJ_G0039928	pseudogene	Chr11:123296818-123298664 (+)
BALB/cJ	MGP_BALBcJ_G0039988	pseudogene	Chr11:120032206-120034845 (+)
C3H/HeJ	MGP_C3HHeJ_G0039633	pseudogene	Chr11:123620556-123624096 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040567	pseudogene	Chr11:129047929-129050577 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038743	pseudogene	Chr11:125127150-125130622 (+)
CBA/J	MGP_CBAJ_G0039602	pseudogene	Chr11:134076939-134082691 (+)
DBA/2J	MGP_DBA2J_G0039798	pseudogene	Chr11:119047112-119049167 (+)
FVB/NJ	MGP_FVBNJ_G0039765	pseudogene	Chr11:118757986-118761557 (+)
LP/J	MGP_LPJ_G0039836	pseudogene	Chr11:125553126-125554948 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039747	pseudogene	Chr11:132911804-132913876 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040662	pseudogene	Chr11:123963094-123965238 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0038963	pseudogene	Chr11:123957115-123959281 (+)

Homology

• Gene Tree
  Gm11771
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000083618 (Evidence)
• NCBI Gene
  667778

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083618	Ensembl Gene Model | MGI Sequence Detail	2056	C57BL/6J
transcript	ENSMUST00000118124	Ensembl | MGI Sequence Detail	732	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm11771:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106368	Chr11:120656110-120656126 (+)	-18 bp
Tssr106369	Chr11:120657075-120657092 (+)	948 bp
Tssr106370	Chr11:120657869-120657907 (+)	1,752 bp
Tssr106371	Chr11:120657922-120657935 (+)	1,793 bp
Tssr106372	Chr11:120658147-120658177 (+)	2,026 bp