Gm12565 Pseudogene Detail

Summary

• Symbol
  Gm12565
• Name
  predicted gene 12565

• Feature Type
  pseudogene
• IDs
  MGI:3652206
  NCBI Gene: 665778
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:37653573-37654221 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.46 cM

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652206	pseudogene	Chr3:37653377-37654362 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012102	pseudogene	Chr3:35462111-35462775 (-)
A/J	MGP_AJ_G0012096	pseudogene	Chr3:34743321-34743964 (-)
AKR/J	MGP_AKRJ_G0012057	pseudogene	Chr3:35399835-35400499 (-)
BALB/cJ	MGP_BALBcJ_G0012072	pseudogene	Chr3:34500561-34501209 (-)
C3H/HeJ	MGP_C3HHeJ_G0011950	pseudogene	Chr3:35450921-35451564 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012378	pseudogene	Chr3:37098588-37099236 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011923	pseudogene	Chr3:38103073-38103716 (-)
DBA/2J	MGP_DBA2J_G0011977	pseudogene	Chr3:34188111-34188763 (-)
FVB/NJ	MGP_FVBNJ_G0011984	pseudogene	Chr3:33629711-33630359 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011986	pseudogene	Chr3:40590500-40591164 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012387	pseudogene	Chr3:35250562-35251226 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011755	pseudogene	Chr3:35268903-35269546 (-)

Homology

• Gene Tree
  Gm12565
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm12565
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000081093 (Evidence)
• NCBI Gene
  665778

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081093	Ensembl Gene Model | MGI Sequence Detail	649	C57BL/6J
transcript	ENSMUST00000119004	Ensembl | MGI Sequence Detail	649	Not Applicable

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm12565:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33053	Chr3:37654386-37654393 (-)	-169 bp