Gm11963 Gene Detail

Summary

• Symbol
  Gm11963
• Name
  predicted gene 11963

• Feature Type
  lncRNA gene
• IDs
  MGI:3652248
  NCBI Gene: 102639290
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:5448659-5456757 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.60 cM

Strain
Comparison

• SNPs within 2kb
  314 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652248	lncRNA gene	Chr11:5435880-5456757 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002915	antisense lncRNA gene	Chr11:2554249-2560946 (+)
A/J	MGP_AJ_G0002892	antisense lncRNA gene	Chr11:2465330-2474779 (+)
AKR/J	MGP_AKRJ_G0002873	antisense lncRNA gene	Chr11:2600681-2607449 (+)
BALB/cJ	MGP_BALBcJ_G0002880	antisense lncRNA gene	Chr11:2453046-2461112 (+)
C3H/HeJ	MGP_C3HHeJ_G0002835	antisense lncRNA gene	Chr11:2471482-2477970 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003022	antisense lncRNA gene	Chr11:2621343-2628255 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002564	antisense lncRNA gene	Chr11:2360177-2367180 (+)
CAST/EiJ	MGP_CASTEiJ_G0002807	antisense lncRNA gene	Chr11:2429654-2436209 (+)
CBA/J	MGP_CBAJ_G0002832	antisense lncRNA gene	Chr11:2946553-2955490 (+)
DBA/2J	MGP_DBA2J_G0002839	antisense lncRNA gene	Chr11:2360271-2372443 (+)
FVB/NJ	MGP_FVBNJ_G0002858	antisense lncRNA gene	Chr11:2403868-2414443 (+)
LP/J	MGP_LPJ_G0002914	antisense lncRNA gene	Chr11:2632027-2640348 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002846	antisense lncRNA gene	Chr11:2583110-2590987 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003025	antisense lncRNA gene	Chr11:2583079-2590722 (+)
PWK/PhJ	MGP_PWKPhJ_G0002765	antisense lncRNA gene	Chr11:2388693-2395627 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002714	antisense lncRNA gene	Chr11:2574712-2581754 (+)
WSB/EiJ	MGP_WSBEiJ_G0002836	antisense lncRNA gene	Chr11:2437916-2445155 (+)

Homology

• Gene Tree
  Gm11963
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  14
• Gene trapped
  14
• Find Mice (IMSR)
  19 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000085189 (Evidence)
• NCBI Gene
  102639290

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085189	Ensembl Gene Model | MGI Sequence Detail	8099	C57BL/6J
transcript	ENSMUST00000149826	Ensembl | MGI Sequence Detail	1720	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm11963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100176	Chr11:5448676-5448689 (+)	24 bp
Tssr100177	Chr11:5455964-5455982 (+)	7,314 bp