Gm12520 Pseudogene Detail

Summary

• Symbol
  Gm12520
• Name
  predicted gene 12520

• Feature Type
  pseudogene
• IDs
  MGI:3652271
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:56162940-56163255 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 30.94 cM

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652271	pseudogene	Chr4:56162940-56163255 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012673	pseudogene	Chr4:54917854-54918169 (+)
A/J	MGP_AJ_G0012662	pseudogene	Chr4:52803878-52804193 (+)
AKR/J	MGP_AKRJ_G0012632	pseudogene	Chr4:54243663-54243978 (+)
BALB/cJ	MGP_BALBcJ_G0012645	pseudogene	Chr4:52967824-52968139 (+)
C3H/HeJ	MGP_C3HHeJ_G0012504	pseudogene	Chr4:54768628-54768943 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012971	pseudogene	Chr4:56877204-56877519 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011277	pseudogene	Chr4:49634500-49634815 (+)
CAST/EiJ	MGP_CASTEiJ_G0012260	pseudogene	Chr4:54469358-54469673 (+)
CBA/J	MGP_CBAJ_G0012447	pseudogene	Chr4:46950860-46951175 (-)
DBA/2J	MGP_DBA2J_G0012542	pseudogene	Chr4:52718038-52718353 (+)
FVB/NJ	MGP_FVBNJ_G0012543	pseudogene	Chr4:51940237-51940552 (+)
LP/J	MGP_LPJ_G0012614	pseudogene	Chr4:54995332-54995647 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012551	pseudogene	Chr4:62003859-62004174 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012974	pseudogene	Chr4:54469278-54469593 (+)
PWK/PhJ	MGP_PWKPhJ_G0012087	pseudogene	Chr4:52691049-52691364 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011901	pseudogene	Chr4:53733330-53733645 (+)
WSB/EiJ	MGP_WSBEiJ_G0012282	pseudogene	Chr4:54380598-54380913 (+)

Homology

• Gene Tree
  Gm12520
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081290 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081290	Ensembl Gene Model | MGI Sequence Detail	316	C57BL/6J
transcript	ENSMUST00000117493	Ensembl | MGI Sequence Detail	316	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;