Gm13679 Pseudogene Detail

Summary

• Symbol
  Gm13679
• Name
  predicted gene 13679

• Feature Type
  pseudogene
• IDs
  MGI:3652284
  NCBI Gene: 606538
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:83220473-83220956 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.33 cM

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652284	pseudogene	Chr2:83220435-83221162 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011730	pseudogene	Chr2:84067904-84068387 (+)
A/J	MGP_AJ_G0011724	pseudogene	Chr2:80806320-80806803 (+)
AKR/J	MGP_AKRJ_G0011691	pseudogene	Chr2:82923769-82924252 (+)
BALB/cJ	MGP_BALBcJ_G0011704	pseudogene	Chr2:80986361-80986844 (+)
C3H/HeJ	MGP_C3HHeJ_G0011591	pseudogene	Chr2:83220609-83221092 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012000	pseudogene	Chr2:86611558-86612041 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010616	pseudogene	Chr2:122551282-122551776 (+)
CAST/EiJ	MGP_CASTEiJ_G0011377	pseudogene	Chr2:83668006-83668489 (+)
CBA/J	MGP_CBAJ_G0011566	pseudogene	Chr2:89786193-89786676 (+)
DBA/2J	MGP_DBA2J_G0011616	pseudogene	Chr2:80396220-80396703 (+)
FVB/NJ	MGP_FVBNJ_G0011621	pseudogene	Chr2:79651735-79652218 (+)
LP/J	MGP_LPJ_G0011687	pseudogene	Chr2:83925707-83926190 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011622	pseudogene	Chr2:92012020-92012503 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011996	pseudogene	Chr2:83117177-83117660 (+)
PWK/PhJ	MGP_PWKPhJ_G0011230	pseudogene	Chr2:80235238-80235717 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011054	pseudogene	Chr2:83281433-83281916 (+)
WSB/EiJ	MGP_WSBEiJ_G0011405	pseudogene	Chr2:83798150-83798633 (+)

Homology

• Gene Tree
  Gm13679
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13679
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083291 (Evidence)
• NCBI Gene
  606538

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083291	Ensembl Gene Model | MGI Sequence Detail	484	C57BL/6J
transcript	ENSMUST00000118678	Ensembl | MGI Sequence Detail	484	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087