Gm12299 Gene Detail

Summary

• Symbol
  Gm12299
• Name
  predicted gene 12299

• Feature Type
  lncRNA gene
• IDs
  MGI:3652304
  NCBI Gene: 115487731
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:66892912-66902451 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 40.59 cM

Strain
Comparison

• SNPs within 2kb
  371 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652304	lncRNA gene	Chr11:66892912-66903024 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015179	unclassified non-coding RNA gene	Chr11:67278666-67288473 (+)
A/J	MGP_AJ_G0015153	unclassified non-coding RNA gene	Chr11:64756398-64765790 (+)
AKR/J	MGP_AKRJ_G0015116	unclassified non-coding RNA gene	Chr11:66698078-66707368 (+)
BALB/cJ	MGP_BALBcJ_G0015115	unclassified non-coding RNA gene	Chr11:65041590-65051498 (+)
C3H/HeJ	MGP_C3HHeJ_G0014939	unclassified non-coding RNA gene	Chr11:66704438-66714905 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015572	unclassified non-coding RNA gene	Chr11:69306131-69319629 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013315	unclassified non-coding RNA gene	Chr11:61721897-61730934 (+)
CAST/EiJ	MGP_CASTEiJ_G0014492	unclassified non-coding RNA gene	Chr11:66925908-66936750 (+)
CBA/J	MGP_CBAJ_G0014918	unclassified non-coding RNA gene	Chr11:72353238-72367254 (+)
DBA/2J	MGP_DBA2J_G0015011	unclassified non-coding RNA gene	Chr11:64303242-64313309 (+)
FVB/NJ	MGP_FVBNJ_G0015023	unclassified non-coding RNA gene	Chr11:63964561-63973868 (+)
LP/J	MGP_LPJ_G0015092	unclassified non-coding RNA gene	Chr11:67825394-67838619 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015049	unclassified non-coding RNA gene	Chr11:73185989-73196356 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015611	unclassified non-coding RNA gene	Chr11:66919098-66931902 (+)
PWK/PhJ	MGP_PWKPhJ_G0014284	unclassified non-coding RNA gene	Chr11:64946504-64957654 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014071	unclassified non-coding RNA gene	Chr11:66758464-66767583 (+)
WSB/EiJ	MGP_WSBEiJ_G0014595	unclassified non-coding RNA gene	Chr11:66544607-66555630 (+)

Homology

• Gene Tree
  Gm12299
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm12299
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085926 (Evidence)
• NCBI Gene
  115487731

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085926	Ensembl Gene Model | MGI Sequence Detail	9540	C57BL/6J
transcript	ENSMUST00000138819	Ensembl | MGI Sequence Detail	2327	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12299:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102148	Chr11:66901453-66901464 (+)	8,547 bp