About   Help   FAQ
Gm11690 Gene Detail
Summary
  • Symbol
    Gm11690
  • Name
    predicted gene 11690
  • Synonyms
    lnc00492, LncRNA00492
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3652329
    NCBI Gene: 102641704
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:114110054-114129328 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 79.65 cM
Strain
Comparison
more
  • SNPs within 2kb
    745 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3652329
 lncRNA gene Chr11:114103526-114129328 (-)
129S1/SvImJ MGP_129S1SvImJ_G0005315
 lincRNA gene Chr11:118075155-118102912 (-)
A/J MGP_AJ_G0005298
 lincRNA gene Chr11:112987498-113007522 (-)
AKR/J MGP_AKRJ_G0005277
 lincRNA gene Chr11:116313376-116332506 (-)
BALB/cJ MGP_BALBcJ_G0005280
 lincRNA gene Chr11:113399504-113418671 (-)
C3H/HeJ MGP_C3HHeJ_G0005229
 lincRNA gene Chr11:116667634-116689027 (-)
C57BL/6NJ MGP_C57BL6NJ_G0005432
 lincRNA gene Chr11:121614934-121637718 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004822
 lincRNA gene Chr11:110060257-110079766 (-)
CAST/EiJ MGP_CASTEiJ_G0005176
 lincRNA gene Chr11:117959977-117985471 (-)
CBA/J MGP_CBAJ_G0005218
 lincRNA gene Chr11:126564795-126584057 (-)
DBA/2J MGP_DBA2J_G0005236
 lincRNA gene Chr11:112424053-112443615 (-)
FVB/NJ MGP_FVBNJ_G0005261
 lincRNA gene Chr11:111902090-111921661 (-)
LP/J MGP_LPJ_G0005317
 lincRNA gene Chr11:118507189-118529352 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0005243
 lincRNA gene Chr11:125694277-125713473 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0005436
 lincRNA gene Chr11:116978836-117001015 (-)
PWK/PhJ MGP_PWKPhJ_G0005125
 lincRNA gene Chr11:113646189-113666350 (-)
SPRET/EiJ MGP_SPRETEiJ_G0005046
 lincRNA gene Chr11:116791879-116813021 (-)
WSB/EiJ MGP_WSBEiJ_G0005224
 lincRNA gene Chr11:116938760-116957988 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Mice homozygous for a null allele exhibit blocked T2 B cells development leading to decreased marginal zone B cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085844 Ensembl Gene Model | MGI Sequence Detail 19275 C57BL/6J ±  kb
transcript ENSMUST00000128183 Ensembl | MGI Sequence Detail 1867 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 8
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:333855 Wang F, et al., LncRNA00492 is required for marginal zone B-cell development. Immunology. 2022 Jan;165(1):88-98
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory