Gm13900 Pseudogene Detail

Summary

• Symbol
  Gm13900
• Name
  predicted gene 13900

• Feature Type
  pseudogene
• IDs
  MGI:3652334
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:106831093-106831590 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.99 cM

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652334	pseudogene	Chr2:106831093-106831590 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011810	pseudogene	Chr2:109236603-109237100 (+)
A/J	MGP_AJ_G0011801	pseudogene	Chr2:104678076-104678573 (+)
AKR/J	MGP_AKRJ_G0011769	pseudogene	Chr2:107548129-107548626 (+)
BALB/cJ	MGP_BALBcJ_G0011777	pseudogene	Chr2:104962755-104963252 (+)
C3H/HeJ	MGP_C3HHeJ_G0011665	pseudogene	Chr2:107871523-107872020 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012082	pseudogene	Chr2:112805244-112805741 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010574	pseudogene	Chr2:100450392-100450881 (+)
CAST/EiJ	MGP_CASTEiJ_G0011452	pseudogene	Chr2:108392370-108392867 (+)
CBA/J	MGP_CBAJ_G0011642	pseudogene	Chr2:116719385-116719882 (+)
DBA/2J	MGP_DBA2J_G0011693	pseudogene	Chr2:104230782-104231279 (+)
FVB/NJ	MGP_FVBNJ_G0011695	pseudogene	Chr2:103185959-103186456 (+)
LP/J	MGP_LPJ_G0011762	pseudogene	Chr2:109418723-109419220 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011700	pseudogene	Chr2:120508959-120509456 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012075	pseudogene	Chr2:107741576-107742073 (+)
PWK/PhJ	MGP_PWKPhJ_G0011302	pseudogene	Chr2:103785539-103786036 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011124	pseudogene	Chr2:106962719-106963216 (+)
WSB/EiJ	MGP_WSBEiJ_G0011477	pseudogene	Chr2:108474019-108474516 (+)

Homology

• Gene Tree
  Gm13900
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13900
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081966 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081966	Ensembl Gene Model | MGI Sequence Detail	498	C57BL/6J
transcript	ENSMUST00000119402	Ensembl | MGI Sequence Detail	498	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17