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Nhlrc4 Gene Detail
Summary
  • Symbol
    Nhlrc4
  • Name
    NHL repeat containing 4
  • Synonyms
    F430201B04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:3687200
    NCBI Gene: 621239
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr17:26161207-26163905 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 13.03 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3687200
 protein coding gene Chr17:26161207-26163935 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023383
 protein coding gene Chr17:25055012-25057718 (-)
A/J MGP_AJ_G0023342
 protein coding gene Chr17:24316490-24319220 (-)
AKR/J MGP_AKRJ_G0023308
 protein coding gene Chr17:24428132-24430842 (-)
BALB/cJ MGP_BALBcJ_G0023347
 protein coding gene Chr17:24547605-24550575 (-)
C3H/HeJ MGP_C3HHeJ_G0023107
 protein coding gene Chr17:24810428-24814135 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023789
 protein coding gene Chr17:26108961-26111731 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021265
 protein coding gene Chr17:21779874-21782517 (-)
CAST/EiJ MGP_CASTEiJ_G0022609
 protein coding gene Chr17:24704778-24707258 (-)
CBA/J MGP_CBAJ_G0023082
 protein coding gene Chr17:27034080-27038968 (-)
DBA/2J MGP_DBA2J_G0023212
 protein coding gene Chr17:23918187-23921168 (-)
FVB/NJ MGP_FVBNJ_G0023182
 protein coding gene Chr17:23669789-23672499 (-)
LP/J MGP_LPJ_G0023289
 protein coding gene Chr17:25346017-25348628 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023201
 protein coding gene Chr17:26623024-26625734 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023829
 protein coding gene Chr17:24748319-24752266 (-)
PWK/PhJ MGP_PWKPhJ_G0022358
 protein coding gene Chr17:22693735-22696493 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022176
 protein coding gene Chr17:22825946-22828636 (-)
WSB/EiJ MGP_WSBEiJ_G0022672
 protein coding gene Chr17:24800476-24803887 (-)



Homology
more
  • Human Ortholog
    NHLRC4, NHL repeat containing 4
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NHLRC4, NHL repeat containing 4
  • Links
    NCBI Gene ID: 283948
    neXtProt AC: NX_P0CG21
    UniProt: P0CG21

  • Chr Location
    16p13.3; chr16:567005-569495 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Endonuclease-mediated
    1
  • Radiation induced
    2
  • Targeted
    1
  • Genomic Mutations
    2 involving Nhlrc4
  • Find Mice (IMSR)
    9 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

Biological Process

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 621239 NCBI Gene Model | MGI Sequence Detail 2699 C57BL/6J ±  kb
transcript NM_001039038 RefSeq | MGI Sequence Detail 2152 C57BL/6  
polypeptide Q3UP44 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 16
    Phenotypes 5
  • Earliest
    J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory