C130013H08Rik Gene Detail

Summary

• Symbol
  C130013H08Rik
• Name
  RIKEN cDNA C130013H08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697343
  NCBI Gene: 100327264
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:110157331-110161022 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  234 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697343	lncRNA gene	Chr3:110157331-110161022 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003819	antisense lncRNA gene	Chr3:111867336-111871027 (+)
A/J	MGP_AJ_G0003799	antisense lncRNA gene	Chr3:108304208-108307899 (+)
AKR/J	MGP_AKRJ_G0003775	antisense lncRNA gene	Chr3:110966200-110969891 (+)
BALB/cJ	MGP_BALBcJ_G0003786	antisense lncRNA gene	Chr3:108015813-108019723 (+)
C3H/HeJ	MGP_C3HHeJ_G0003733	antisense lncRNA gene	Chr3:111318320-111322011 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003928	antisense lncRNA gene	Chr3:116011155-116014846 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003431	antisense lncRNA gene	Chr3:104380566-104384300 (+)
CAST/EiJ	MGP_CASTEiJ_G0003697	antisense lncRNA gene	Chr3:110728382-110732098 (+)
CBA/J	MGP_CBAJ_G0003727	antisense lncRNA gene	Chr3:120007917-120011608 (+)
DBA/2J	MGP_DBA2J_G0003739	antisense lncRNA gene	Chr3:107497270-107500961 (+)
FVB/NJ	MGP_FVBNJ_G0003760	antisense lncRNA gene	Chr3:105347084-105350775 (+)
LP/J	MGP_LPJ_G0003821	antisense lncRNA gene	Chr3:113321794-113325485 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003747	antisense lncRNA gene	Chr3:126023005-126026696 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003929	antisense lncRNA gene	Chr3:110565780-110569471 (+)
PWK/PhJ	MGP_PWKPhJ_G0003653	antisense lncRNA gene	Chr3:107244086-107247809 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003597	antisense lncRNA gene	Chr3:108721759-108744891 (+)
WSB/EiJ	MGP_WSBEiJ_G0003733	antisense lncRNA gene	Chr3:111119526-111123217 (+)

Homology

• Gene Tree
  C130013H08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C130013H08Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000105509 (Evidence)
• NCBI Gene
  100327264

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105509	Ensembl Gene Model | MGI Sequence Detail	3692	C57BL/6J
transcript	ENSMUST00000197569	Ensembl | MGI Sequence Detail	3692	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for C130013H08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31306	Chr3:110157459-110157494 (+)	146 bp
Tssr31307	Chr3:110157499-110157520 (+)	179 bp