4930474H06Rik Gene Detail

Summary

• Symbol
  4930474H06Rik
• Name
  RIKEN cDNA 4930474H06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697432
  NCBI Gene: 100048916
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr12:71364395-71368434 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 29.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697432	lncRNA gene	Chr12:71364395-71368434 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015231	unclassified non-coding RNA gene	Chr12:71100605-71106082 (-)
A/J	MGP_AJ_G0015205	unclassified non-coding RNA gene	Chr12:68447273-68452794 (-)
AKR/J	MGP_AKRJ_G0015168	unclassified non-coding RNA gene	Chr12:70506214-70511117 (-)
BALB/cJ	MGP_BALBcJ_G0015167	unclassified non-coding RNA gene	Chr12:68920010-68925531 (-)
C3H/HeJ	MGP_C3HHeJ_G0014991	unclassified non-coding RNA gene	Chr12:70975925-70981446 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015624	unclassified non-coding RNA gene	Chr12:73356249-73360191 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013366	unclassified non-coding RNA gene	Chr12:65943848-65945160 (-)
CAST/EiJ	MGP_CASTEiJ_G0014544	unclassified non-coding RNA gene	Chr12:65712530-65719450 (-)
CBA/J	MGP_CBAJ_G0014970	unclassified non-coding RNA gene	Chr12:76092252-76098680 (-)
DBA/2J	MGP_DBA2J_G0015063	unclassified non-coding RNA gene	Chr12:68356022-68361543 (-)
FVB/NJ	MGP_FVBNJ_G0015074	unclassified non-coding RNA gene	Chr12:67231632-67240552 (-)
LP/J	MGP_LPJ_G0015144	unclassified non-coding RNA gene	Chr12:71099779-71103818 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015101	unclassified non-coding RNA gene	Chr12:79303344-79307383 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015663	unclassified non-coding RNA gene	Chr12:69984803-69991215 (-)
PWK/PhJ	MGP_PWKPhJ_G0014336	unclassified non-coding RNA gene	Chr12:62635543-62640956 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014123	unclassified non-coding RNA gene	Chr12:64363031-64368473 (-)
WSB/EiJ	MGP_WSBEiJ_G0014647	unclassified non-coding RNA gene	Chr12:70600795-70606320 (-)

Homology

• Gene Tree
  4930474H06Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4930474H06Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000087109 (Evidence)
• NCBI Gene
  100048916

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087109	Ensembl Gene Model | MGI Sequence Detail	4040	C57BL/6J
transcript	ENSMUST00000132822	Ensembl | MGI Sequence Detail	1590	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;