C230038L03Rik Gene Detail

Summary

• Symbol
  C230038L03Rik
• Name
  RIKEN cDNA C230038L03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3697433
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:96556033-96601093 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 53.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1487 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3697433	lncRNA gene	Chr7:96556033-96601093 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015680	unclassified non-coding RNA gene	Chr7:99599088-99642765 (-)
A/J	MGP_AJ_G0015659	unclassified non-coding RNA gene	Chr7:97127894-97170777 (-)
AKR/J	MGP_AKRJ_G0015622	unclassified non-coding RNA gene	Chr7:99425057-99467093 (-)
BALB/cJ	MGP_BALBcJ_G0015620	unclassified non-coding RNA gene	Chr7:96818737-96860597 (-)
C3H/HeJ	MGP_C3HHeJ_G0015442	unclassified non-coding RNA gene	Chr7:99802326-99844495 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016074	unclassified non-coding RNA gene	Chr7:103459463-103502628 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013804	unclassified non-coding RNA gene	Chr7:99611496-99654939 (-)
CAST/EiJ	MGP_CASTEiJ_G0014996	unclassified non-coding RNA gene	Chr7:91311749-91364576 (-)
CBA/J	MGP_CBAJ_G0015423	unclassified non-coding RNA gene	Chr7:106960133-107004510 (-)
DBA/2J	MGP_DBA2J_G0015518	unclassified non-coding RNA gene	Chr7:95498087-95540246 (-)
FVB/NJ	MGP_FVBNJ_G0015525	unclassified non-coding RNA gene	Chr7:95280722-95323002 (-)
LP/J	MGP_LPJ_G0015598	unclassified non-coding RNA gene	Chr7:100913549-100965264 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015547	unclassified non-coding RNA gene	Chr7:108529265-108572045 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016116	unclassified non-coding RNA gene	Chr7:98746105-98788166 (-)
PWK/PhJ	MGP_PWKPhJ_G0014779	unclassified non-coding RNA gene	Chr7:88554341-88598311 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014568	unclassified non-coding RNA gene	Chr7:85987545-86033578 (-)
WSB/EiJ	MGP_WSBEiJ_G0015102	unclassified non-coding RNA gene	Chr7:99382624-99425971 (-)

Homology

• Gene Tree
  C230038L03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C230038L03Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000085560 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085560	Ensembl Gene Model | MGI Sequence Detail	45061	C57BL/6J
transcript	ENSMUST00000129409	Ensembl | MGI Sequence Detail	2632	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55

TSS for C230038L03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr73566	Chr7:96601049-96601088 (-)	24 bp