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BC037039 Gene Detail
Summary
  • Symbol
    BC037039
  • Name
    cDNA sequence BC037039
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3697820
    NCBI Gene: 100126030
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37938771-37940975 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    102 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3697820
 lncRNA gene Chr18:37938771-37940975 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003445
 antisense lncRNA gene Chr18:36222330-36224534 (-)
A/J MGP_AJ_G0003424
 antisense lncRNA gene Chr18:34975038-34977242 (-)
AKR/J MGP_AKRJ_G0003404
 antisense lncRNA gene Chr18:35933551-35935755 (-)
BALB/cJ MGP_BALBcJ_G0003413
 antisense lncRNA gene Chr18:35041032-35043236 (-)
C3H/HeJ MGP_C3HHeJ_G0003362
 antisense lncRNA gene Chr18:36001278-36003482 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003551
 antisense lncRNA gene Chr18:37520445-37522649 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003065
 antisense lncRNA gene Chr18:34992408-34994617 (-)
CAST/EiJ MGP_CASTEiJ_G0003325
 antisense lncRNA gene Chr18:35939490-35941694 (-)
CBA/J MGP_CBAJ_G0003359
 antisense lncRNA gene Chr18:38626154-38628358 (-)
DBA/2J MGP_DBA2J_G0003368
 antisense lncRNA gene Chr18:34574543-34576747 (-)
FVB/NJ MGP_FVBNJ_G0003385
 antisense lncRNA gene Chr18:34284813-34287017 (-)
LP/J MGP_LPJ_G0003439
 antisense lncRNA gene Chr18:36284076-36286280 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003373
 antisense lncRNA gene Chr18:39888952-39891156 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003554
 antisense lncRNA gene Chr18:35794581-35796785 (-)
PWK/PhJ MGP_PWKPhJ_G0003281
 antisense lncRNA gene Chr18:34780917-34783121 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003226
 antisense lncRNA gene Chr18:36015282-36017487 (-)
WSB/EiJ MGP_WSBEiJ_G0003359
 antisense lncRNA gene Chr18:35697627-35699831 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    64
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103309 Ensembl Gene Model | MGI Sequence Detail 2205 C57BL/6J ±  kb
transcript ENSMUST00000192003 Ensembl | MGI Sequence Detail 2205 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 64
    cDNA 64

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Phenotypes 2
  • Earliest
    J:244163 Hasegawa S, et al., Distinct and Cooperative Functions for the Protocadherin-alpha, -beta and -gamma Clusters in Neuronal Survival and Axon Targeting. Front Mol Neurosci. 2016;9:155
  • Latest
    J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory