Zfp978 Gene Detail

Summary

• Symbol
  Zfp978
• Name
  zinc finger protein 978
• Synonyms
  Gm13145

• Feature Type
  protein coding gene
• IDs
  MGI:3701123
  NCBI Gene: 108168963
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:147445760-147475461 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3701123	protein coding gene	Chr4:147445760-147476484 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029105	protein coding gene	Chr4:151289828-151293830 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0029086	protein coding gene	Chr4:144368256-144374509 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0029534	protein coding gene	Chr4:155479865-155485348 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0028880	protein coding gene	Chr4:143012515-143220907 (+)
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• MGI Vertebrate Homology
  Zfp978 stringent orthology
  1 mouse;2 rat
  
• Gene Tree
  Zfp978
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Zfp978
• Find Mice (IMSR)
  46 strains or lines available

Expression

• Assay Results
  709
• Tissues
  3
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000078497 (Evidence)
• NCBI Gene
  108168963

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078497	Ensembl Gene Model | MGI Sequence Detail	29702	C57BL/6J
transcript	ENSMUST00000154154	Ensembl | MGI Sequence Detail	1250	Not Applicable
polypeptide	ENSMUSP00000114248	Ensembl | MGI Sequence Detail	335	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR036051 KRAB domain superfamily
  IPR001909 Krueppel-associated box
  IPR050169 Krueppel C2H2-type zinc-finger
  IPR036236 Zinc finger C2H2 superfamily
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:224530 Dietrich JE, et al., Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages. EMBO Rep. 2015 Aug;16(8):1005-21

TSS for Zfp978:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40229	Chr4:147445737-147445759 (+)	-12 bp