Msantd5f5 Gene Detail

Summary

• Symbol
  Msantd5f5
• Name
  Myb/SANT DNA binding domain containing 5 family member 5
• Synonyms
  Gm11237

• Feature Type
  protein coding gene
• IDs
  MGI:3702292
  NCBI Gene: 623197
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:73541221-73545264 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.06 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3702292	protein coding gene	Chr4:73538852-73545266 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  MSANTD5, Myb/SANT DNA binding domain containing 5
  
• Links
  HGNC:55184

  NCBI Gene ID: 102724657

  neXtProt AC: NX_A0A3B3IT52

  UniProt: A0A3B3IT52

  
  
• Chr Location
  chr5:178691534-178707472 (-)  GRCh38

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• MGI Vertebrate Homology
  Msantd5f5 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: MSANTD5
• Gene Tree
  Msantd5f5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Msantd5f5
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000094116 (Evidence)
• NCBI Gene
  623197

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094116	Ensembl Gene Model | MGI Sequence Detail	4044	C57BL/6J
transcript	ENSMUST00000178319	Ensembl | MGI Sequence Detail	1322	Not Applicable
polypeptide	ENSMUSP00000137528	Ensembl | MGI Sequence Detail	360	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:7514125

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;