Gm10171 Pseudogene Detail

Summary

• Symbol
  Gm10171
• Name
  predicted gene 10171

• Feature Type
  pseudogene
• IDs
  MGI:3704203
  NCBI Gene: 100041219
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:171971841-171972468 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 79.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704203	pseudogene	Chr1:171971460-171972532 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011898	pseudogene	Chr2:144987649-144988251 (+)
AKR/J	MGP_AKRJ_G0011863	pseudogene	Chr2:149225004-149225606 (+)
BALB/cJ	MGP_BALBcJ_G0011874	pseudogene	Chr2:145425263-145425865 (+)
C3H/HeJ	MGP_C3HHeJ_G0011757	pseudogene	Chr2:149680863-149681465 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0010654	pseudogene	Chr2:139073814-139074412 (+)
CAST/EiJ	MGP_CASTEiJ_G0013567	pseudogene	Chr8:108376313-108376882 (-)
CBA/J	MGP_CBAJ_G0011731	pseudogene	Chr2:161225906-161226508 (+)
DBA/2J	MGP_DBA2J_G0013972	pseudogene	Chr8:104389170-104390270 (-)
FVB/NJ	MGP_FVBNJ_G0011789	pseudogene	Chr2:142807591-142808193 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014002	pseudogene	Chr8:120237191-120237865 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010178	pseudogene	Chr1:6023301-6024169 (-)
PWK/PhJ	MGP_PWKPhJ_G0011392	pseudogene	Chr2:143957213-143957815 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011210	pseudogene	Chr2:148169510-148170112 (+)
WSB/EiJ	MGP_WSBEiJ_G0011563	pseudogene	Chr2:150137382-150137984 (+)

Homology

• Gene Tree
  Gm10171
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm10171
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000089803 (Evidence)
• NCBI Gene
  100041219

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089803	Ensembl Gene Model | MGI Sequence Detail	628	C57BL/6J
transcript	ENSMUST00000126220	Ensembl | MGI Sequence Detail	628	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;