Gm9845 Pseudogene Detail

Summary

• Symbol
  Gm9845
• Name
  predicted pseudogene 9845

• Feature Type
  pseudogene
• IDs
  MGI:3704215
  NCBI Gene: 100040853
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:39412455-39413052 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 18.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  65 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704215	pseudogene	Chr3:39411524-39413277 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010153	pseudogene	Chr1:58653883-58659532 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0010117	pseudogene	Chr1:58128794-58134972 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010059	pseudogene	Chr1:58404842-58415976 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010377	pseudogene	Chr1:60987655-60993638 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009124	pseudogene	Chr1:52478524-52483980 (+)
CAST/EiJ	MGP_CASTEiJ_G0009892	pseudogene	Chr1:57587019-57597173 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0010055	pseudogene	Chr1:56025284-56030927 (+)
FVB/NJ	MGP_FVBNJ_G0010078	pseudogene	Chr1:55342718-55348364 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0010039	pseudogene	Chr1:65822074-65828848 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0009797	pseudogene	Chr1:55374633-55380079 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009609	pseudogene	Chr1:57602557-57608050 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm9845
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm9845
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000050533 (Evidence)
• NCBI Gene
  100040853

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050533	Ensembl Gene Model | MGI Sequence Detail	598	C57BL/6J
transcript	ENSMUST00000056409	Ensembl | MGI Sequence Detail	598	Not Applicable

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9845:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33062	Chr3:39413305-39413309 (-)	-255 bp