Gm12945 Gene Detail

Summary

• Symbol
  Gm12945
• Name
  predicted gene 12945
• Synonyms
  ENSMUSG00000073756

• Feature Type
  lncRNA gene
• IDs
  MGI:3704237
  NCBI Gene: 100048926
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:126217392-126219030 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 60.37 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704237	lncRNA gene	Chr4:126217392-126219030 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015576	unclassified non-coding RNA gene	Chr4:127998250-127999887 (+)
A/J	MGP_AJ_G0015553	unclassified non-coding RNA gene	Chr4:122960625-122962261 (+)
AKR/J	MGP_AKRJ_G0015517	unclassified non-coding RNA gene	Chr4:126339752-126341390 (+)
BALB/cJ	MGP_BALBcJ_G0015515	unclassified non-coding RNA gene	Chr4:123536291-123537929 (+)
C3H/HeJ	MGP_C3HHeJ_G0015337	unclassified non-coding RNA gene	Chr4:126406686-126408324 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015968	unclassified non-coding RNA gene	Chr4:132889621-132891259 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013703	unclassified non-coding RNA gene	Chr4:116107727-116109327 (+)
CAST/EiJ	MGP_CASTEiJ_G0014892	unclassified non-coding RNA gene	Chr4:124513532-124515170 (+)
CBA/J	MGP_CBAJ_G0015318	unclassified non-coding RNA gene	Chr4:136090413-136092051 (+)
DBA/2J	MGP_DBA2J_G0015411	unclassified non-coding RNA gene	Chr4:123414727-123416365 (+)
FVB/NJ	MGP_FVBNJ_G0015419	unclassified non-coding RNA gene	Chr4:122070818-122072449 (+)
LP/J	MGP_LPJ_G0015492	unclassified non-coding RNA gene	Chr4:128284742-128286379 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015442	unclassified non-coding RNA gene	Chr4:141124293-141125924 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016010	unclassified non-coding RNA gene	Chr4:126693843-126695481 (+)
PWK/PhJ	MGP_PWKPhJ_G0014677	unclassified non-coding RNA gene	Chr4:119902692-119904316 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014465	unclassified non-coding RNA gene	Chr4:122520956-122522588 (+)
WSB/EiJ	MGP_WSBEiJ_G0014997	unclassified non-coding RNA gene	Chr4:126795099-126796737 (+)

Homology

• Gene Tree
  Gm12945
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12945
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000087394 (Evidence)
• NCBI Gene
  100048926

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087394	Ensembl Gene Model | MGI Sequence Detail	1639	C57BL/6J
transcript	ENSMUST00000140080	Ensembl | MGI Sequence Detail	674	Not Applicable
polypeptide	Q3UIM7	UniProt | EBI | MGI Sequence Detail	122	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12