Gmfg-ps Pseudogene Detail

Summary

• Symbol
  Gmfg-ps
• Name
  glia maturation factor, gamma, pseudogene
• Synonyms
  Gm9835

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3704264
  NCBI Gene: 100040018
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:4893352-4893778 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 1.85 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704264	pseudogene	Chr6:4893293-4893868 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013674	pseudogene	Chr6:1752278-1755126 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012136	pseudogene	Chr7:27639282-27644102 (+)
CAST/EiJ	MGP_CASTEiJ_G0013333	pseudogene	Chr7:20928335-20941395 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013677	pseudogene	Chr6:1633159-1633638 (-)
PWK/PhJ	MGP_PWKPhJ_G0013144	pseudogene	Chr7:21331905-21337520 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012919	pseudogene	Chr7:17731671-17737426 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  GMFG, glia maturation factor gamma

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  GMFG, glia maturation factor gamma
  
• Synonyms
  GMF-GAMMA
• Links
  HGNC:4374

  NCBI Gene ID: 9535

  neXtProt AC: NX_O60234

  UniProt: O60234

  
  
• Chr Location
  19q13.2; chr19:39328353-39342372 (-)  GRCh38

---

• MGI Vertebrate Homology
  Gmfg-ps stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: GMFG
• Gene Tree
  Gmfg-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  2

• Ensembl
  ENSMUSG00000083041 (Evidence)
• NCBI Gene
  100040018

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083041	Ensembl Gene Model | MGI Sequence Detail	427	C57BL/6J
transcript	ENSMUST00000121071	Ensembl | MGI Sequence Detail	427	Not Applicable
polypeptide	XP_030111568	RefSeq | MGI Sequence Detail	109	C57BL/6J

Other
Accession IDs

MGI:5887113

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;