Gm16499 Gene Detail

Summary

• Symbol
  Gm16499
• Name
  predicted gene 16499
• Synonyms
  Gm43938

• Feature Type
  lncRNA gene
• IDs
  MGI:3704267
  NCBI Gene: 100049166
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:53800711-53835998 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 26.08 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1061 from dbSNP Build 142
• Strain Annotations
  35

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704267	lncRNA gene	Chr6:53795728-53845168 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006968	lincRNA gene	Chr6:53148924-53151100 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004274	antisense lncRNA gene	Chr6:53147693-53197790 (+)
A/J	MGP_AJ_G0006963	lincRNA gene	Chr6:50672213-50674389 (+)
A/J	MGP_AJ_G0004252	antisense lncRNA gene	Chr6:50670982-50721117 (+)
AKR/J	MGP_AKRJ_G0004233	antisense lncRNA gene	Chr6:52402900-52456251 (+)
AKR/J	MGP_AKRJ_G0006933	lincRNA gene	Chr6:52404131-52406307 (+)
BALB/cJ	MGP_BALBcJ_G0004239	antisense lncRNA gene	Chr6:51024046-51076730 (+)
BALB/cJ	MGP_BALBcJ_G0006940	lincRNA gene	Chr6:51025277-51027453 (+)
C3H/HeJ	MGP_C3HHeJ_G0004187	antisense lncRNA gene	Chr6:52424206-52473874 (+)
C3H/HeJ	MGP_C3HHeJ_G0006884	lincRNA gene	Chr6:52425437-52427613 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007102	lincRNA gene	Chr6:54331221-54333397 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004388	antisense lncRNA gene	Chr6:54329990-54383789 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006349	lincRNA gene	Chr6:48287309-48289695 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003861	antisense lncRNA gene	Chr6:48286078-48335698 (+)
CAST/EiJ	MGP_CASTEiJ_G0004149	antisense lncRNA gene	Chr6:52258828-52313049 (+)
CAST/EiJ	MGP_CASTEiJ_G0006800	lincRNA gene	Chr6:52260068-52262244 (+)
CBA/J	MGP_CBAJ_G0004181	antisense lncRNA gene	Chr6:56574664-56628920 (+)
CBA/J	MGP_CBAJ_G0006866	lincRNA gene	Chr6:56575895-56578071 (+)
DBA/2J	MGP_DBA2J_G0004197	antisense lncRNA gene	Chr6:50579953-50629750 (+)
DBA/2J	MGP_DBA2J_G0006886	lincRNA gene	Chr6:50581184-50583360 (+)
FVB/NJ	MGP_FVBNJ_G0006909	lincRNA gene	Chr6:50171153-50173329 (+)
FVB/NJ	MGP_FVBNJ_G0004213	antisense lncRNA gene	Chr6:50169922-50218733 (+)
LP/J	MGP_LPJ_G0004275	antisense lncRNA gene	Chr6:53096134-53149257 (+)
LP/J	MGP_LPJ_G0006968	lincRNA gene	Chr6:53097365-53099541 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006889	lincRNA gene	Chr6:59130654-59132830 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004203	antisense lncRNA gene	Chr6:59129423-59183510 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007106	lincRNA gene	Chr6:52339071-52341247 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004385	antisense lncRNA gene	Chr6:52337840-52392552 (+)
PWK/PhJ	MGP_PWKPhJ_G0006740	lincRNA gene	Chr6:50222110-50224282 (+)
PWK/PhJ	MGP_PWKPhJ_G0004102	antisense lncRNA gene	Chr6:50220879-50271723 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006650	lincRNA gene	Chr6:51705901-51708092 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004046	antisense lncRNA gene	Chr6:51704661-51765479 (+)
WSB/EiJ	MGP_WSBEiJ_G0006855	lincRNA gene	Chr6:52362384-52364560 (+)
WSB/EiJ	MGP_WSBEiJ_G0004185	antisense lncRNA gene	Chr6:52361153-52414030 (+)

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  5
• UniProt
  1

• Ensembl
  ENSMUSG00000108175 (Evidence), ENSMUSG00000108255 (Evidence)
• NCBI Gene
  100049166

Representative Sequences			Length	Strain/Species
genomic	100049166	NCBI Gene Model | MGI Sequence Detail	35288	C57BL/6J
transcript	BC006619	GenBank | ENA | DDBJ | MGI Sequence Detail	2193	FVB/N
polypeptide	Q923D0	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:5690330

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;