Gm9797 Pseudogene Detail

Summary

• Symbol
  Gm9797
• Name
  predicted pseudogene 9797

• Feature Type
  pseudogene
• IDs
  MGI:3704349
  NCBI Gene: 100039343
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:11485042-11485335 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 3.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704349	pseudogene	Chr10:11484968-11486182 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036070	protein coding gene	ChrX:131718208-131720299 (-)
A/J	MGP_AJ_G0027291	protein coding gene	Chr3:79788818-79789812 (+)
AKR/J	MGP_AKRJ_G0035971	protein coding gene	ChrX:135352256-135356870 (-)
BALB/cJ	MGP_BALBcJ_G0036043	protein coding gene	ChrX:129572283-129586457 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0036565	protein coding gene	ChrX:135608977-135613421 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033392	protein coding gene	ChrX:123325336-123329320 (-)
CAST/EiJ	MGP_CASTEiJ_G0035034	protein coding gene	ChrX:112669466-112673880 (-)
CBA/J	MGP_CBAJ_G0035724	protein coding gene	ChrX:139672257-139676051 (-)
DBA/2J	MGP_DBA2J_G0035877	protein coding gene	ChrX:130449247-130453581 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0035970	protein coding gene	ChrX:132596465-132600799 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035847	protein coding gene	ChrX:147023825-147025006 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036594	protein coding gene	ChrX:131150196-131155640 (-)
PWK/PhJ	MGP_PWKPhJ_G0034725	protein coding gene	ChrX:109611178-109615602 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0035171	protein coding gene	ChrX:129515881-129520235 (-)

Homology

• Gene Tree
  Gm9797
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000045455 (Evidence)
• NCBI Gene
  100039343

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045455	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000218003	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9797:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92365	Chr10:11485000-11485013 (+)	-35 bp