Trav6n-5 Gene Detail

Summary

• Symbol
  Trav6n-5
• Name
  T cell receptor alpha variable 6N-5
• Synonyms
  ENSMUSG00000072087, Gm10894

• Feature Type
  gene segment
• IDs
  MGI:3704437
  NCBI Gene: 100126451
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr14:53342328-53342801 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  59 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704437	gene segment	Chr14:53342328-53342801 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002499	gene segment	Chr14:45634940-45635412 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0002631	gene segment	Chr14:49312686-49313154 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002442	gene segment	Chr14:44095813-44096282 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0002473	gene segment	Chr14:45381075-45381544 (+)
FVB/NJ	MGP_FVBNJ_G0002486	gene segment	Chr14:44951864-44952351 (+)
LP/J	MGP_LPJ_G0002529	gene segment	Chr14:47500051-47500520 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002485	gene segment	Chr14:50647793-50648258 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002620	gene segment	Chr14:46620323-46620793 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0002361	gene segment	Chr14:43088131-43088596 (+)
WSB/EiJ	MGP_WSBEiJ_G0002470	gene segment	Chr14:46920398-46920867 (+)

Homology

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1

• Vertebrate Orthologs
  11

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV9-1, T cell receptor alpha variable 9-1
  
• Synonyms
  TCRAV9S1, TRAV91
• Links
  HGNC:12153

  NCBI Gene ID: 28678

  UniProt: A0A075B6T8

  
  
• Chr Location
  14q11.2; chr14:21811502-21811977 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav6n-5 stringent orthology
  1 human;1 mouse;10 zebrafish
  
• HCOP
  vertebrate homology predictions: TRAV9-1
• Gene Tree
  Trav6n-5
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076800 (Evidence)
• NCBI Gene
  100126451

Representative Sequences			Length	Strain/Species
genomic	100126451	NCBI Gene Model | MGI Sequence Detail	474	C57BL/6J
polypeptide	A0A075B621	UniProt | EBI | MGI Sequence Detail	112	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

References

• Summaries
  All 7
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61