About   Help   FAQ
Trav9n-2 Gene Detail
Summary
  • Symbol
    Trav9n-2
  • Name
    T cell receptor alpha variable 9N-2
  • Synonyms
    ENSMUSG00000072529, Gm10897
  • Feature Type
    gene segment
  • IDs
    MGI:3704438
    NCBI Gene: 667660
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53440579-53441001 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704438
 gene segment Chr14:53440579-53441011 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Vertebrate Orthologs
    18
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Synonyms
    TCRAV1S1, TCRAV8S1, TRAV81
  • Links
    NCBI Gene ID: 28685
    UniProt: A0A0A6YYK1

  • Chr Location
    14q11.2; chr14:21797287-21797886 (+)  GRCh38
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Synonyms
    TCRAV1S4, TCRAV8S3, TRAV83
  • Links
    NCBI Gene ID: 28683
    UniProt: A0A0A6YYJ7

  • Chr Location
    14q11.2; chr14:21852558-21853006 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    9
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 667660 NCBI Gene Model | MGI Sequence Detail 423 C57BL/6J ±  kb
transcript BC126859 GenBank | ENA | DDBJ | MGI Sequence Detail 782 Not Specified  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 9
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory