Gm11476 Gene Detail

Summary

• Symbol
  Gm11476
• Name
  predicted gene 11476

• Feature Type
  lncRNA gene
• IDs
  MGI:3705135
  NCBI Gene: 102634096
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:167395234-167449765 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 87.35 cM

Strain
Comparison

• SNPs within 2kb
  1240 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705135	lncRNA gene	Chr2:167395232-167450061 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015491	unclassified non-coding RNA gene	Chr2:173294704-173358164 (+)
A/J	MGP_AJ_G0015468	unclassified non-coding RNA gene	Chr2:166155248-166216678 (+)
AKR/J	MGP_AKRJ_G0015432	unclassified non-coding RNA gene	Chr2:171113667-171180066 (+)
BALB/cJ	MGP_BALBcJ_G0015431	unclassified non-coding RNA gene	Chr2:166515427-166575067 (+)
C3H/HeJ	MGP_C3HHeJ_G0015254	unclassified non-coding RNA gene	Chr2:171484572-171548526 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015885	unclassified non-coding RNA gene	Chr2:178349484-178416758 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013623	unclassified non-coding RNA gene	Chr2:159475607-159530357 (+)
CAST/EiJ	MGP_CASTEiJ_G0014806	unclassified non-coding RNA gene	Chr2:171945768-172011672 (+)
CBA/J	MGP_CBAJ_G0015235	unclassified non-coding RNA gene	Chr2:184896956-184978629 (+)
DBA/2J	MGP_DBA2J_G0015329	unclassified non-coding RNA gene	Chr2:165274423-165329765 (+)
FVB/NJ	MGP_FVBNJ_G0015336	unclassified non-coding RNA gene	Chr2:163798685-163864509 (+)
LP/J	MGP_LPJ_G0015407	unclassified non-coding RNA gene	Chr2:173311875-173375028 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015360	unclassified non-coding RNA gene	Chr2:188271147-188338268 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015925	unclassified non-coding RNA gene	Chr2:171046473-171104202 (+)
PWK/PhJ	MGP_PWKPhJ_G0014594	unclassified non-coding RNA gene	Chr2:164939380-165000761 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014382	unclassified non-coding RNA gene	Chr2:169980632-170055601 (+)
WSB/EiJ	MGP_WSBEiJ_G0014913	unclassified non-coding RNA gene	Chr2:171953444-172016839 (+)

Homology

• Gene Tree
  Gm11476
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  7

• Ensembl
  ENSMUSG00000085596 (Evidence)
• NCBI Gene
  102634096

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085596	Ensembl Gene Model | MGI Sequence Detail	54532	C57BL/6J
transcript	ENSMUST00000127006	Ensembl | MGI Sequence Detail	2019	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm11476:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr769	Chr2:167430910-167430921 (+)	35,682 bp
Tssr21821	Chr2:167431001-167431022 (+)	35,778 bp