Gm11574 Gene Detail

Summary

• Symbol
  Gm11574
• Name
  predicted gene 11574

• Feature Type
  lncRNA gene
• IDs
  MGI:3705166
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:96938719-96942258 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 60.74 cM

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705166	lncRNA gene	Chr11:96938719-96942258 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015201	unclassified non-coding RNA gene	Chr11:99429658-99432399 (-)
A/J	MGP_AJ_G0015175	unclassified non-coding RNA gene	Chr11:95357956-95360702 (-)
AKR/J	MGP_AKRJ_G0015138	unclassified non-coding RNA gene	Chr11:98314215-98316961 (-)
BALB/cJ	MGP_BALBcJ_G0015137	unclassified non-coding RNA gene	Chr11:95846923-95849666 (-)
C3H/HeJ	MGP_C3HHeJ_G0014961	unclassified non-coding RNA gene	Chr11:98425124-98427867 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015594	unclassified non-coding RNA gene	Chr11:102510577-102513318 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013337	unclassified non-coding RNA gene	Chr11:92819888-92822645 (-)
CAST/EiJ	MGP_CASTEiJ_G0014514	unclassified non-coding RNA gene	Chr11:99281857-99284616 (-)
CBA/J	MGP_CBAJ_G0014940	unclassified non-coding RNA gene	Chr11:106722904-106725650 (-)
DBA/2J	MGP_DBA2J_G0015033	unclassified non-coding RNA gene	Chr11:94908505-94911248 (-)
FVB/NJ	MGP_FVBNJ_G0015045	unclassified non-coding RNA gene	Chr11:94387407-94390148 (-)
LP/J	MGP_LPJ_G0015114	unclassified non-coding RNA gene	Chr11:99954806-99957547 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015071	unclassified non-coding RNA gene	Chr11:106641113-106643859 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015633	unclassified non-coding RNA gene	Chr11:98608174-98610917 (-)
PWK/PhJ	MGP_PWKPhJ_G0014306	unclassified non-coding RNA gene	Chr11:95881497-95884372 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014093	unclassified non-coding RNA gene	Chr11:98334261-98337033 (-)
WSB/EiJ	MGP_WSBEiJ_G0014617	unclassified non-coding RNA gene	Chr11:98513947-98516692 (-)

Homology

• Gene Tree
  Gm11574
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm11574
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000085262 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085262	Ensembl Gene Model | MGI Sequence Detail	3540	C57BL/6J
transcript	ENSMUST00000139752	Ensembl | MGI Sequence Detail	1739	Not Applicable

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11574:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr110388	Chr11:96939221-96939241 (-)	3,027 bp
Tssr110387	Chr11:96939193-96939211 (-)	3,056 bp