Gm15133 Gene Detail

Summary

• Symbol
  Gm15133
• Name
  predicted gene 15133

• Feature Type
  lncRNA gene
• IDs
  MGI:3705170
  NCBI Gene: 622070
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:103964238-103974045 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 55.69 cM

Strain
Comparison

• SNPs within 2kb
  412 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705170	lncRNA gene	Chr7:103964191-103974063 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004489	antisense lncRNA gene	Chr7:107504140-107513637 (+)
A/J	MGP_AJ_G0004469	antisense lncRNA gene	Chr7:104689308-104698804 (+)
AKR/J	MGP_AKRJ_G0004452	antisense lncRNA gene	Chr7:107312805-107322302 (+)
BALB/cJ	MGP_BALBcJ_G0004454	antisense lncRNA gene	Chr7:104421866-104431363 (+)
C3H/HeJ	MGP_C3HHeJ_G0004403	antisense lncRNA gene	Chr7:107569219-107578716 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004604	antisense lncRNA gene	Chr7:111623414-111633146 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004059	antisense lncRNA gene	Chr7:106779826-106789510 (+)
CAST/EiJ	MGP_CASTEiJ_G0004363	antisense lncRNA gene	Chr7:99293321-99308072 (+)
CBA/J	MGP_CBAJ_G0004398	antisense lncRNA gene	Chr7:115479538-115489035 (+)
DBA/2J	MGP_DBA2J_G0004412	antisense lncRNA gene	Chr7:103023480-103032977 (+)
FVB/NJ	MGP_FVBNJ_G0004429	antisense lncRNA gene	Chr7:102733529-102743026 (+)
LP/J	MGP_LPJ_G0004493	antisense lncRNA gene	Chr7:108832945-108842442 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004418	antisense lncRNA gene	Chr7:116959669-116969255 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004603	antisense lncRNA gene	Chr7:106500981-106510450 (+)
PWK/PhJ	MGP_PWKPhJ_G0004316	antisense lncRNA gene	Chr7:96023948-96034764 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004257	antisense lncRNA gene	Chr7:93644299-93653986 (+)
WSB/EiJ	MGP_WSBEiJ_G0004402	antisense lncRNA gene	Chr7:107163159-107173479 (+)

Homology

• Gene Tree
  Gm15133
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15133
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000087175 (Evidence)
• NCBI Gene
  622070

Representative Sequences			Length	Strain/Species
genomic	622070	NCBI Gene Model | MGI Sequence Detail	9808	C57BL/6J
transcript	NR_040749	RefSeq | MGI Sequence Detail	832	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 17

  Phenotypes 9
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm15133:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68368	Chr7:103964194-103964218 (+)	-32 bp