Gm15050 MGI Mouse Gene Detail - MGI:3705180

Sequence Map

Chr6:52149861-52151039 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705180	lncRNA gene	Chr6:52149861-52151039 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004270	antisense lncRNA gene	Chr6:51408333-51409486 (+)
A/J	MGP_AJ_G0004248	antisense lncRNA gene	Chr6:49008510-49009675 (+)
AKR/J	MGP_AKRJ_G0004229	antisense lncRNA gene	Chr6:50713862-50716602 (+)
BALB/cJ	MGP_BALBcJ_G0004235	antisense lncRNA gene	Chr6:49367765-49368930 (+)
C3H/HeJ	MGP_C3HHeJ_G0004183	antisense lncRNA gene	Chr6:50722602-50723779 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004384	antisense lncRNA gene	Chr6:52545883-52547065 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003857	antisense lncRNA gene	Chr6:46656480-46657659 (+)
CAST/EiJ	MGP_CASTEiJ_G0004145	antisense lncRNA gene	Chr6:50534670-50536109 (+)
CBA/J	MGP_CBAJ_G0004177	antisense lncRNA gene	Chr6:54747277-54748588 (+)
DBA/2J	MGP_DBA2J_G0004193	antisense lncRNA gene	Chr6:48931613-48932780 (+)
FVB/NJ	MGP_FVBNJ_G0004209	antisense lncRNA gene	Chr6:48541464-48542623 (+)
LP/J	MGP_LPJ_G0004271	antisense lncRNA gene	Chr6:51393084-51394223 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004199	antisense lncRNA gene	Chr6:57377642-57378788 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004381	antisense lncRNA gene	Chr6:50640848-50642011 (+)
PWK/PhJ	MGP_PWKPhJ_G0004098	antisense lncRNA gene	Chr6:48553354-48554705 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004042	antisense lncRNA gene	Chr6:49976278-49977439 (+)
WSB/EiJ	MGP_WSBEiJ_G0004181	antisense lncRNA gene	Chr6:50655632-50656781 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	100504154	NCBI Gene Model \| MGI Sequence Detail	1179	C57BL/6J	± kb
	transcript	NR_152256	RefSeq \| MGI Sequence Detail	552	ZRU/MplStud

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Summaries

All 20

Phenotypes 10
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:207500 Berlivet S, et al., Clustering of tissue-specific sub-TADs accompanies the regulation of HoxA genes in developing limbs. PLoS Genet. 2013 Dec;9(12):e1004018

TSS for Gm15050:

(View these features in JBrowse)

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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