Gm15423 Gene Detail

Summary

• Symbol
  Gm15423
• Name
  predicted gene 15423

• Feature Type
  lncRNA gene
• IDs
  MGI:3705184
  NCBI Gene: 102640747
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:176755565-176760277 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 82.66 cM

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705184	lncRNA gene	Chr1:176735589-176768568 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002799	antisense lncRNA gene	Chr1:183075607-183080316 (-)
A/J	MGP_AJ_G0002776	antisense lncRNA gene	Chr1:175686676-175691385 (-)
AKR/J	MGP_AKRJ_G0002757	antisense lncRNA gene	Chr1:180950623-180955332 (-)
BALB/cJ	MGP_BALBcJ_G0002763	antisense lncRNA gene	Chr1:176218031-176222740 (-)
C3H/HeJ	MGP_C3HHeJ_G0002721	antisense lncRNA gene	Chr1:181555925-181560634 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002905	antisense lncRNA gene	Chr1:189118453-189123165 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002452	antisense lncRNA gene	Chr1:166977439-166982117 (-)
CAST/EiJ	MGP_CASTEiJ_G0002693	antisense lncRNA gene	Chr1:180928101-180932796 (-)
CBA/J	MGP_CBAJ_G0002716	antisense lncRNA gene	Chr1:195992734-195997446 (-)
DBA/2J	MGP_DBA2J_G0002723	antisense lncRNA gene	Chr1:174556786-174561498 (-)
FVB/NJ	MGP_FVBNJ_G0002743	antisense lncRNA gene	Chr1:172644329-172649038 (-)
LP/J	MGP_LPJ_G0002799	antisense lncRNA gene	Chr1:184260876-184265585 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002733	antisense lncRNA gene	Chr1:203223567-203228276 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002910	antisense lncRNA gene	Chr1:180681704-180686413 (-)
PWK/PhJ	MGP_PWKPhJ_G0002651	antisense lncRNA gene	Chr1:173632491-173637203 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002601	antisense lncRNA gene	Chr1:179785739-179790448 (-)
WSB/EiJ	MGP_WSBEiJ_G0002722	antisense lncRNA gene	Chr1:180911828-180916540 (-)

Homology

• Gene Tree
  Gm15423
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm15423
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  6

• Ensembl
  ENSMUSG00000087082 (Evidence)
• NCBI Gene
  102640747

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087082	Ensembl Gene Model | MGI Sequence Detail	4713	C57BL/6J
transcript	ENSMUST00000150600	Ensembl | MGI Sequence Detail	1430	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;