Gm15471 Gene Detail

Summary

• Symbol
  Gm15471
• Name
  predicted gene 15471

• Feature Type
  lncRNA gene
• IDs
  MGI:3705197
  NCBI Gene: 100503157
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:103710445-103715755 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 45.52 cM

Strain
Comparison

• SNPs within 2kb
  74 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705197	lncRNA gene	Chr3:103710445-103715756 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015514	unclassified non-coding RNA gene	Chr3:105091759-105097083 (+)
A/J	MGP_AJ_G0015491	unclassified non-coding RNA gene	Chr3:101746493-101751817 (+)
AKR/J	MGP_AKRJ_G0015455	unclassified non-coding RNA gene	Chr3:104230216-104235540 (+)
BALB/cJ	MGP_BALBcJ_G0015453	unclassified non-coding RNA gene	Chr3:101516680-101522048 (+)
C3H/HeJ	MGP_C3HHeJ_G0015276	unclassified non-coding RNA gene	Chr3:104598948-104604272 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015907	unclassified non-coding RNA gene	Chr3:108986410-108991720 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013643	unclassified non-coding RNA gene	Chr3:97874198-97879658 (+)
CAST/EiJ	MGP_CASTEiJ_G0014830	unclassified non-coding RNA gene	Chr3:103713787-103719113 (+)
CBA/J	MGP_CBAJ_G0015257	unclassified non-coding RNA gene	Chr3:112732532-112737856 (+)
DBA/2J	MGP_DBA2J_G0015351	unclassified non-coding RNA gene	Chr3:100991624-100996934 (+)
FVB/NJ	MGP_FVBNJ_G0015358	unclassified non-coding RNA gene	Chr3:98919658-98924982 (+)
LP/J	MGP_LPJ_G0015430	unclassified non-coding RNA gene	Chr3:106432321-106437645 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015382	unclassified non-coding RNA gene	Chr3:118839324-118844692 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015948	unclassified non-coding RNA gene	Chr3:103786180-103791548 (+)
PWK/PhJ	MGP_PWKPhJ_G0014617	unclassified non-coding RNA gene	Chr3:100763849-100769176 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014405	unclassified non-coding RNA gene	Chr3:101849433-101854921 (+)
WSB/EiJ	MGP_WSBEiJ_G0014936	unclassified non-coding RNA gene	Chr3:104334676-104340043 (+)

Homology

• Gene Tree
  Gm15471
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm15471
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000084997 (Evidence)
• NCBI Gene
  100503157

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084997	Ensembl Gene Model | MGI Sequence Detail	5311	C57BL/6J
transcript	ENSMUST00000149374	Ensembl | MGI Sequence Detail	1235	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Diseases 1

  Phenotypes 6
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm15471:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30997	Chr3:103710437-103710445 (+)	-4 bp
Tssr30998	Chr3:103710949-103710958 (+)	509 bp