Gm15389 Gene Detail

Summary

• Symbol
  Gm15389
• Name
  predicted gene 15389

• Feature Type
  lncRNA gene
• IDs
  MGI:3705287
  NCBI Gene: 102635334
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:107614738-107621244 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 50.34 cM

Strain
Comparison

• SNPs within 2kb
  286 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705287	lncRNA gene	Chr1:107614730-107621244 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004937	lincRNA gene	Chr1:109956405-109963778 (+)
A/J	MGP_AJ_G0004919	lincRNA gene	Chr1:106114239-106120463 (+)
AKR/J	MGP_AKRJ_G0004896	lincRNA gene	Chr1:109041107-109047177 (+)
BALB/cJ	MGP_BALBcJ_G0004900	lincRNA gene	Chr1:106214082-106220590 (+)
C3H/HeJ	MGP_C3HHeJ_G0004849	lincRNA gene	Chr1:109460485-109466842 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005050	lincRNA gene	Chr1:114112806-114120206 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004798	lincRNA gene	Chr1:108403528-108409832 (+)
CBA/J	MGP_CBAJ_G0004841	lincRNA gene	Chr1:118020778-118030635 (+)
DBA/2J	MGP_DBA2J_G0004860	lincRNA gene	Chr1:105144565-105150705 (+)
FVB/NJ	MGP_FVBNJ_G0004879	lincRNA gene	Chr1:104084346-104090055 (+)
LP/J	MGP_LPJ_G0004938	lincRNA gene	Chr1:111232789-111239034 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004864	lincRNA gene	Chr1:122445696-122453701 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005055	lincRNA gene	Chr1:109033879-109040769 (+)
PWK/PhJ	MGP_PWKPhJ_G0004751	lincRNA gene	Chr1:104186996-104193439 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004845	lincRNA gene	Chr1:108927310-108935780 (+)

Homology

• Gene Tree
  Gm15389
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm15389
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000086161 (Evidence)
• NCBI Gene
  102635334

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086161	Ensembl Gene Model | MGI Sequence Detail	6507	C57BL/6J
transcript	ENSMUST00000153774	Ensembl | MGI Sequence Detail	666	Not Applicable

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107