Gm15420 Gene Detail

Summary

• Symbol
  Gm15420
• Name
  predicted gene 15420

• Feature Type
  lncRNA gene
• IDs
  MGI:3705302
  NCBI Gene: 102638735
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:27854317-27855842 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.59 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705302	lncRNA gene	Chr17:27854218-27855842 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003381	antisense lncRNA gene	Chr17:26955171-26956691 (+)
A/J	MGP_AJ_G0003357	antisense lncRNA gene	Chr17:26100900-26102416 (+)
AKR/J	MGP_AKRJ_G0003340	antisense lncRNA gene	Chr17:26263511-26265024 (+)
BALB/cJ	MGP_BALBcJ_G0003346	antisense lncRNA gene	Chr17:26373485-26374993 (+)
C3H/HeJ	MGP_C3HHeJ_G0003299	antisense lncRNA gene	Chr17:26636805-26638274 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003488	antisense lncRNA gene	Chr17:28067900-28072423 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003003	antisense lncRNA gene	Chr17:23485851-23487223 (+)
CAST/EiJ	MGP_CASTEiJ_G0003262	antisense lncRNA gene	Chr17:26598325-26599843 (+)
CBA/J	MGP_CBAJ_G0003295	antisense lncRNA gene	Chr17:29039664-29041382 (+)
DBA/2J	MGP_DBA2J_G0003301	antisense lncRNA gene	Chr17:25661168-25662690 (+)
FVB/NJ	MGP_FVBNJ_G0003319	antisense lncRNA gene	Chr17:25445999-25448073 (+)
LP/J	MGP_LPJ_G0003374	antisense lncRNA gene	Chr17:27221132-27222652 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003308	antisense lncRNA gene	Chr17:28526254-28531226 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003489	antisense lncRNA gene	Chr17:26680086-26681623 (+)
PWK/PhJ	MGP_PWKPhJ_G0003221	antisense lncRNA gene	Chr17:24451773-24453299 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003165	antisense lncRNA gene	Chr17:24678612-24680127 (+)
WSB/EiJ	MGP_WSBEiJ_G0003296	antisense lncRNA gene	Chr17:26660183-26661692 (+)

Homology

• Gene Tree
  Gm15420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  33
• Gene trapped
  32
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm15420
• Find Mice (IMSR)
  16 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000087387 (Evidence)
• NCBI Gene
  102638735

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087387	Ensembl Gene Model | MGI Sequence Detail	1526	C57BL/6J
transcript	ENSMUST00000133274	Ensembl | MGI Sequence Detail	388	Not Applicable

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044