Selenot-ps Pseudogene Detail

Summary

• Symbol
  Selenot-ps
• Name
  selenoprotein T, pseudogene
• Synonyms
  Gm15359

• Feature Type
  pseudogene
• IDs
  MGI:3705375
  NCBI Gene: 100040561
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr8:19629956-19630548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 10.35 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705375	pseudogene	Chr8:19629906-19631065 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014052	pseudogene	Chr8:17163613-17164203 (+)
A/J	MGP_AJ_G0014067	pseudogene	Chr8:16619513-16620103 (+)
AKR/J	MGP_AKRJ_G0014001	pseudogene	Chr8:17164496-17165086 (+)
BALB/cJ	MGP_BALBcJ_G0014024	pseudogene	Chr8:16770328-16770918 (+)
C3H/HeJ	MGP_C3HHeJ_G0013856	pseudogene	Chr8:17320569-17321159 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014457	pseudogene	Chr8:17625694-17626284 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010866	pseudogene	Chr3:51985060-51999364 (+)
CAST/EiJ	MGP_CASTEiJ_G0011791	pseudogene	Chr3:57163257-57179422 (+)
CBA/J	MGP_CBAJ_G0013838	pseudogene	Chr8:18588146-18588736 (+)
DBA/2J	MGP_DBA2J_G0013916	pseudogene	Chr8:16472506-16473096 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013999	pseudogene	Chr8:17140324-17140914 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014430	pseudogene	Chr8:17073711-17074301 (+)
PWK/PhJ	MGP_PWKPhJ_G0011636	pseudogene	Chr3:54781441-54794815 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011451	pseudogene	Chr3:56410345-56427006 (+)
WSB/EiJ	MGP_WSBEiJ_G0013577	pseudogene	Chr8:17178086-17178676 (+)

Homology

• Gene Tree
  Selenot-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Selenot-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081920 (Evidence)
• NCBI Gene
  100040561

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081920	Ensembl Gene Model | MGI Sequence Detail	593	C57BL/6J
transcript	ENSMUST00000119098	Ensembl | MGI Sequence Detail	593	Not Applicable

Other
Accession IDs

MGI:5909025

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662