Gm15196 Pseudogene Detail

Summary

• Symbol
  Gm15196
• Name
  predicted gene 15196

• Feature Type
  pseudogene
• IDs
  MGI:3705411
  NCBI Gene: 100041427
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:159092003-159092484 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 73.95 cM

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705411	pseudogene	ChrX:159091926-159093225 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014980	pseudogene	ChrX:158230219-158230700 (-)
A/J	MGP_AJ_G0014969	pseudogene	ChrX:157500755-157501236 (-)
AKR/J	MGP_AKRJ_G0014911	pseudogene	ChrX:162491805-162492286 (-)
BALB/cJ	MGP_BALBcJ_G0014924	pseudogene	ChrX:155566665-155567146 (-)
C3H/HeJ	MGP_C3HHeJ_G0014762	pseudogene	ChrX:158627084-158627565 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015410	pseudogene	ChrX:162948911-162949392 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013031	pseudogene	ChrX:148743799-148744276 (-)
CAST/EiJ	MGP_CASTEiJ_G0014367	pseudogene	ChrX:137652904-137653385 (-)
CBA/J	MGP_CBAJ_G0014746	pseudogene	ChrX:167579938-167580419 (-)
DBA/2J	MGP_DBA2J_G0014831	pseudogene	ChrX:156465499-156465980 (-)
FVB/NJ	MGP_FVBNJ_G0014814	pseudogene	ChrX:155579473-155579954 (-)
LP/J	MGP_LPJ_G0014932	pseudogene	ChrX:159413433-159413914 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014858	pseudogene	ChrX:176278824-176279305 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015394	pseudogene	ChrX:157784547-157785028 (-)
PWK/PhJ	MGP_PWKPhJ_G0014159	pseudogene	ChrX:134522621-134523102 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013948	pseudogene	ChrX:138062907-138063389 (-)
WSB/EiJ	MGP_WSBEiJ_G0014447	pseudogene	ChrX:155735897-155736378 (-)

Homology

• Gene Tree
  Gm15196
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm15196
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000083516 (Evidence)
• NCBI Gene
  100041427

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083516	Ensembl Gene Model | MGI Sequence Detail	482	C57BL/6J
transcript	ENSMUST00000121406	Ensembl | MGI Sequence Detail	482	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:46359 Blair HJ, et al., Mouse mutants carrying deletions that remove the genes mutated in Coffin-Lowry syndrome and lactic acidosis. Hum Mol Genet. 1998 Mar;7(3):549-55