Gm14593 Pseudogene Detail

Summary

• Symbol
  Gm14593
• Name
  predicted gene 14593

• Feature Type
  pseudogene
• IDs
  MGI:3705445
  NCBI Gene: 115489116
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:52774803-52775096 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 30.06 cM

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705445	pseudogene	ChrX:52774783-52775096 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0014430	pseudogene	ChrX:49050208-49050501 (+)
A/J	MGP_AJ_G0014440	pseudogene	ChrX:48940680-48940973 (+)
AKR/J	MGP_AKRJ_G0014367	pseudogene	ChrX:50311686-50311979 (+)
BALB/cJ	MGP_BALBcJ_G0014393	pseudogene	ChrX:48414600-48414893 (+)
C3H/HeJ	MGP_C3HHeJ_G0014225	pseudogene	ChrX:49325460-49325753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014848	pseudogene	ChrX:50229515-50229808 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012639	pseudogene	ChrX:46327586-46327878 (+)
CAST/EiJ	MGP_CASTEiJ_G0013866	pseudogene	ChrX:36615139-36615432 (+)
CBA/J	MGP_CBAJ_G0014208	pseudogene	ChrX:51621994-51622287 (+)
DBA/2J	MGP_DBA2J_G0014290	pseudogene	ChrX:48670502-48670795 (+)
FVB/NJ	MGP_FVBNJ_G0014288	pseudogene	ChrX:48294985-48295278 (+)
LP/J	MGP_LPJ_G0014384	pseudogene	ChrX:49432030-49432323 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014321	pseudogene	ChrX:53158695-53158988 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014829	pseudogene	ChrX:48944270-48944563 (+)
PWK/PhJ	MGP_PWKPhJ_G0013678	pseudogene	ChrX:36149325-36149618 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013474	pseudogene	ChrX:37430330-37430623 (+)
WSB/EiJ	MGP_WSBEiJ_G0013932	pseudogene	ChrX:48507924-48508217 (+)

Homology

• Gene Tree
  Gm14593
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084308 (Evidence)
• NCBI Gene
  115489116

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084308	Ensembl Gene Model | MGI Sequence Detail	294	C57BL/6J
transcript	ENSMUST00000119948	Ensembl | MGI Sequence Detail	294	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm14593:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160976	ChrX:52774768-52774783 (+)	-27 bp