Gm15466 Pseudogene Detail

Summary

• Symbol
  Gm15466
• Name
  predicted gene 15466

• Feature Type
  pseudogene
• IDs
  MGI:3705491
  NCBI Gene: 115489676
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:8947298-8947630 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 2.21 cM

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705491	pseudogene	Chr3:8945750-8947802 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012015	pseudogene	Chr3:5730517-5730849 (-)
A/J	MGP_AJ_G0012006	pseudogene	Chr3:5975507-5975839 (-)
AKR/J	MGP_AKRJ_G0011967	pseudogene	Chr3:5856036-5856368 (-)
BALB/cJ	MGP_BALBcJ_G0011984	pseudogene	Chr3:5696071-5696403 (-)
C3H/HeJ	MGP_C3HHeJ_G0011861	pseudogene	Chr3:6123966-6124298 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012289	pseudogene	Chr3:6344969-6347847 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011644	pseudogene	Chr3:6153139-6153466 (-)
CBA/J	MGP_CBAJ_G0011834	pseudogene	Chr3:6267185-6267517 (-)
DBA/2J	MGP_DBA2J_G0010960	pseudogene	Chr14:1099882-1100214 (-)
FVB/NJ	MGP_FVBNJ_G0011896	pseudogene	Chr3:5454734-5455172 (-)
LP/J	MGP_LPJ_G0011962	pseudogene	Chr3:6253896-6254228 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011898	pseudogene	Chr3:7394099-7394431 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012296	pseudogene	Chr3:5698015-5698347 (-)
PWK/PhJ	MGP_PWKPhJ_G0011492	pseudogene	Chr3:5774127-5774481 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011307	pseudogene	Chr3:5834982-5835314 (-)
WSB/EiJ	MGP_WSBEiJ_G0011665	pseudogene	Chr3:5701251-5701586 (-)

Homology

• Gene Tree
  Gm15466
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081657 (Evidence)
• NCBI Gene
  115489676

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081657	Ensembl Gene Model | MGI Sequence Detail	333	C57BL/6J
transcript	ENSMUST00000122299	Ensembl | MGI Sequence Detail	333	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm15466:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32561	Chr3:8947801-8947804 (-)	-173 bp