Gm15227 Pseudogene Detail

Summary

• Symbol
  Gm15227
• Name
  predicted gene 15227

• Feature Type
  pseudogene
• IDs
  MGI:3705540
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:164988850-164989248 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 76.77 cM

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705540	pseudogene	ChrX:164988850-164989248 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015004	pseudogene	ChrX:164337347-164337745 (+)
A/J	MGP_AJ_G0014994	pseudogene	ChrX:163473428-163473826 (+)
AKR/J	MGP_AKRJ_G0014933	pseudogene	ChrX:168735744-168736142 (+)
BALB/cJ	MGP_BALBcJ_G0014948	pseudogene	ChrX:161465624-161466022 (+)
C3H/HeJ	MGP_C3HHeJ_G0014787	pseudogene	ChrX:164649448-164649846 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015433	pseudogene	ChrX:169135415-169135813 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013051	pseudogene	ChrX:154351996-154352388 (+)
CAST/EiJ	MGP_CASTEiJ_G0014388	pseudogene	ChrX:143521987-143522387 (+)
CBA/J	MGP_CBAJ_G0014771	pseudogene	ChrX:174066604-174067002 (+)
DBA/2J	MGP_DBA2J_G0014855	pseudogene	ChrX:162319413-162319811 (+)
FVB/NJ	MGP_FVBNJ_G0014837	pseudogene	ChrX:161439776-161440174 (+)
LP/J	MGP_LPJ_G0014956	pseudogene	ChrX:165443394-165443792 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014883	pseudogene	ChrX:182783591-182783989 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015418	pseudogene	ChrX:163813352-163813747 (+)
PWK/PhJ	MGP_PWKPhJ_G0014181	pseudogene	ChrX:140288259-140288661 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013967	pseudogene	ChrX:144033267-144033660 (+)
WSB/EiJ	MGP_WSBEiJ_G0014470	pseudogene	ChrX:161652927-161653322 (+)

Homology

• Gene Tree
  Gm15227
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084080 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084080	Ensembl Gene Model | MGI Sequence Detail	399	C57BL/6J
transcript	ENSMUST00000121844	Ensembl | MGI Sequence Detail	399	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;