Sms-ps Pseudogene Detail

Summary

• Symbol
  Sms-ps
• Name
  spermine synthase, pseudogene
• Synonyms
  ENSMUSG00000067829, Gm14680

• Feature Type
  pseudogene
• IDs
  MGI:3705601
  NCBI Gene: 671878
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:61819191-61820291 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3705601	pseudogene	ChrX:61818734-61820291 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0014707	pseudogene	ChrX:101709737-101710763 (+)
AKR/J	MGP_AKRJ_G0014637	pseudogene	ChrX:104931723-104932749 (+)
BALB/cJ	MGP_BALBcJ_G0014655	pseudogene	ChrX:100542787-100543813 (+)
C3H/HeJ	MGP_C3HHeJ_G0014489	pseudogene	ChrX:102349603-102350629 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015142	pseudogene	ChrX:104825027-104825981 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014481	pseudogene	ChrX:108126740-108127707 (+)
DBA/2J	MGP_DBA2J_G0014564	pseudogene	ChrX:101003840-101004866 (+)
FVB/NJ	MGP_FVBNJ_G0014543	pseudogene	ChrX:100298721-100299747 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0014591	pseudogene	ChrX:112791751-112792777 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015111	pseudogene	ChrX:101554305-101555331 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  SMS, spermine synthase

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SMS, spermine synthase
  
• Synonyms
  MRSR, MRXSSR, SPMSY, SpS, SRS
• Links
  HGNC:11123

  NCBI Gene ID: 6611

  neXtProt AC: NX_P52788

  UniProt: P52788

  
  
• Chr Location
  Xp22.11; chrX:21940709-21994837 (+)  GRCh38

---

• MGI Vertebrate Homology
  Sms-ps stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: SMS
• Gene Tree
  Sms-ps
  

Human Diseases

• Diseases
  1 with human SMS associations

				Human Disease	Mouse Models
				syndromic X-linked intellectual disability Snyder type IDs syndromic X-linked intellectual disability Snyder type       DOID:0060802 ICD10CM:Q87.8 OMIM:309583 ORDO:3063

Click on a disease name to see all genes associated with that disease.

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000081752 (Evidence)
• NCBI Gene
  671878

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081752	Ensembl Gene Model | MGI Sequence Detail	1101	C57BL/6J
transcript	ENSMUST00000121773	Ensembl | MGI Sequence Detail	1101	Not Applicable

Other
Accession IDs

MGI:3704511, MGI:5896353

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;